RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 ZMYND10O75800 440 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 AP1G2O75843 785 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 FERP16591 822 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 ATF6P18850 670 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 KRT9P35527 623 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 MRE11P49959 708 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 BPIFB4P59827 614 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 DLX2Q07687 328 aaPredicted RBP21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 ASIC2Q16515 512 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 DDR2Q16832 855 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 PKDCCQ504Y2 493 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 SFMBT2Q5VUG0 894 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 DENND1BQ6P3S1 775 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 CCDC149Q6ZUS6 474 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 SCN4BQ8IWT1 228 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 C12orf76Q8N812 135 aaPredicted RBP21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 STKLD1Q8NE28 680 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 UBA3Q8TBC4 463 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 HDAC7Q8WUI4 952 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 SLC20A1Q8WUM9 679 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 PPM1EQ8WY54 764 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 DDX1Q92499 740 aaKnown RBP21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 SMARCD1Q96GM5 515 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 KCNK16Q96T55 309 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 CLDND1Q9NY35 253 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 AIPL1Q9NZN9 384 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 CLEC1BQ9P126 229 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 NOCTQ9UK39 431 aaKnown RBP21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 ATP8B3O60423 1300 aa21.21■□□□□ 0.99
SHKBP1-222ENST00000600320 F8VP50 259 aa21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 MFAP3LO75121 409 aa21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 FAM200BP0CF97 657 aa21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 CHRNB2P17787 502 aa21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 LTBRP36941 435 aa21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 TUFMP49411 452 aaKnown RBP21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 ADKP55263 362 aaKnown RBP21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 TWF1Q12792 350 aa21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 PPM1LQ5SGD2 360 aa21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 TAF3Q5VWG9 929 aa21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 ANKRD54Q6NXT1 300 aa21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 SYCE2Q6PIF2 218 aa21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 VSTM1Q6UX27 236 aa21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 CLEC20AQ6ZU45 233 aa21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 ANKRD52Q8NB46 1076 aa21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 GPR152Q8TDT2 470 aa21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 DUSP16Q9BY84 665 aa21.2■□□□□ 0.98
SHKBP1-222ENST00000600320 M0QYV0 167 aa21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 TULP2O00295 520 aa21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 MMEP08473 750 aa21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 SKILP12757 684 aa21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 NPR3P17342 541 aa21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 GRIK1P39086 918 aa21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 PDE6CP51160 858 aa21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 MAP3K7CLP57077 242 aa21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 PDE4CQ08493 712 aa21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 SPC24Q8NBT2 197 aa21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 ZNF397Q8NF99 534 aaPredicted RBP21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 OLIG1Q8TAK6 271 aa21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 GIPC2Q8TF65 315 aa21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 PABPC5Q96DU9 382 aaKnown RBP21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 CSNK1G1Q9HCP0 422 aa21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 DZANK1Q9NVP4 752 aa21.19■□□□□ 0.98
SHKBP1-222ENST00000600320 CCL16O15467 120 aa21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 MED7O43513 233 aa21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 PRKCIP41743 596 aa21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 ARID5BQ14865 1188 aa21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 STILQ15468 1287 aa21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 EP400NLQ6ZTU2 488 aa21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 PASD1Q8IV76 773 aa21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 DRC7Q8IY82 874 aa21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 SECISBP2LQ93073 1101 aaKnown RBP21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 ZNF707Q96C28 371 aaPredicted RBP21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 C8orf48Q96LL4 319 aa21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 SYT11Q9BT88 431 aa21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 APOL5Q9BWW9 433 aa21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 DMAP1Q9NPF5 467 aaPredicted RBP21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 HESX1Q9UBX0 185 aa21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 PCDHGC3Q9UN70 934 aa21.18■□□□□ 0.98
SHKBP1-222ENST00000600320 TRANK1O15050 2925 aa21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 HHLA1C9JL84 531 aa21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 AKR1B15C9JRZ8 316 aaPredicted RBP21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 NCK2O43639 380 aa21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 LRG1P02750 347 aa21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 TPM1P09493 284 aa21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 HOXA9P31269 272 aa21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 ALDH1A3P47895 512 aa21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 BCAT1P54687 386 aa21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 RPL10AP62906 217 aaKnown RBP21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 FMO1Q01740 532 aa21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 MTMR3Q13615 1198 aa21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 RARS2Q5T160 578 aaKnown RBP21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 HGSNATQ68CP4 663 aa21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 TC2NQ8N9U0 490 aa21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 OR8K1Q8NGG5 319 aa21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 SYN2Q92777 582 aaPredicted RBP21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 DNAJC7Q99615 494 aa21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 NUCKS1Q9H1E3 243 aaKnown RBP21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 SFXN1Q9H9B4 322 aa21.17■□□□□ 0.98
SHKBP1-222ENST00000600320 ZDHHC7Q9NXF8 308 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms