RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 BCKDHBP21953 392 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 HOXA6P31267 233 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 GBP1P32455 592 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 DDIT3P35638 169 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 CASP5P51878 434 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 ZXDBP98169 803 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 GTF2BQ00403 316 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 MESP2Q0VG99 397 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 MTF1Q14872 753 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 LARP1BQ659C4 914 aaKnown RBP9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 RNF43Q68DV7 783 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 CC2D1AQ6P1N0 951 aaPredicted RBP9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 C1orf228Q6PIY5 440 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 MON1AQ86VX9 555 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 PROSER1Q86XN7 944 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 SCN4BQ8IWT1 228 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 SYNPOQ8N3V7 929 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 C1orf127Q8N9H9 656 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 MRPS31Q92665 395 aaKnown RBP9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 CALML4Q96GE6 196 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 TMX3Q96JJ7 454 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 P2RY13Q9BPV8 354 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 PCIF1Q9H4Z3 704 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 ECT2Q9H8V3 914 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 DUS2Q9NX74 493 aaKnown RBP9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 DDX43Q9NXZ2 648 aaKnown RBP9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 PTPRJQ12913 1337 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 RELNP78509 3460 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 MYMKA6NI61 221 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 CKMP06732 381 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 KRT19P08727 400 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 PLA2G2AP14555 144 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 HNRNPLP14866 589 aaKnown RBP eCLIP9.29□□□□□ -0.927e-13■■■■□ 22.6
SHKBP1-220ENST00000599716 WEE1P30291 646 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 NOVA1P51513 510 aaKnown RBP9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 DGKEP52429 567 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 PSMC1P62191 440 aaKnown RBP9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 DMC1Q14565 340 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 SF3A1Q15459 793 aaKnown RBP9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 ZNF77Q15935 545 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 KYAT1Q16773 422 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 SV2CQ496J9 727 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 C8orf34Q49A92 452 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 C2orf27AQ580R0 203 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 ARL6IP4Q66PJ3 421 aaKnown RBP9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 FAM173BQ6P4H8 233 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 C19orf48Q6RUI8 117 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 ARMCX6Q7L4S7 300 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 CD302Q8IX05 232 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 DCP1BQ8IZD4 617 aaKnown RBP9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 CCDC33Q8N5R6 958 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 FRMD1Q8N878 549 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 SH3RF2Q8TEC5 729 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 LARP4BQ92615 738 aaKnown RBP9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 ERLEC1Q96DZ1 483 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 CLIC6Q96NY7 704 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 PKMYT1Q99640 499 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 CBWD1Q9BRT8 395 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 EDEM2Q9BV94 578 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 ASB7Q9H672 318 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 HSFX1Q9UBD0 423 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 DAXXQ9UER7 740 aaPredicted RBP9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 KCNG1Q9UIX4 513 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 DSEQ9UL01 958 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 CIZ1Q9ULV3 898 aaPredicted RBP9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 DERAQ9Y315 318 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 C2CD2Q9Y426 696 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 NEUROG3Q9Y4Z2 214 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 SNX9Q9Y5X1 595 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 STYXL1Q9Y6J8 313 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 ADAMTS20P59510 1910 aa9.29□□□□□ -0.92
SHKBP1-220ENST00000599716 ASCC3Q8N3C0 2202 aaKnown RBP9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 LNP1A1A4G5 178 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 NOL4O94818 638 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 CAVIN2O95810 425 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 LMO2P25791 158 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 IFNAR2P48551 515 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 USP46P62068 366 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 TSPY1Q01534 308 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 USP4Q13107 963 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 COL28A1Q2UY09 1125 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 EML3Q32P44 896 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 INTS6LQ5JSJ4 861 aaKnown RBP9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 ANO7Q6IWH7 933 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 KIAA1211LQ6NV74 962 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 ZNF720Q7Z2F6 126 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 CPA6Q8N4T0 437 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 CSGALNACT2Q8N6G5 542 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 CXorf38Q8TB03 319 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 OSCP1Q8WVF1 389 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 RLN3Q8WXF3 142 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 KCNN1Q92952 543 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 CD101Q93033 1021 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 HPS3Q969F9 1004 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 AK8Q96MA6 479 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 PANK2Q9BZ23 570 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 MTMR12Q9C0I1 747 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 CCSER1Q9C0I3 900 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 MRPL44Q9H9J2 332 aaKnown RBP9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 PDE11AQ9HCR9 933 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms