RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 GARTP22102 1010 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 CYP2F1P24903 491 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 PCSK1P29120 753 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 TXLNAP40222 546 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 STAT6P42226 847 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 IFNAR2P48551 515 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 WNT7BP56706 349 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 NR1H3Q13133 447 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 ELF2Q15723 593 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 ZNF77Q15935 545 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 SDHAF4Q5VUM1 108 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 DPH6Q7L8W6 267 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 SPATA2LQ8IUW3 424 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-212ENST00000597995 CSGALNACT2Q8N6G5 542 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 TOP6BLQ8N6T0 577 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 FSIP1Q8NA03 581 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 CXorf38Q8TB03 319 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 CD101Q93033 1021 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 ATP2A3Q93084 1043 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 ACDQ96AP0 544 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 CEP295NLQ96MC4 621 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 ZNF396Q96N95 335 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-212ENST00000597995 LSM14BQ9BX40 385 aaKnown RBP13.42□□□□□ -0.26
TRIM28-212ENST00000597995 DUSP15Q9H1R2 295 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-212ENST00000597995 OLFML3Q9NRN5 406 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 RBAKQ9NYW8 714 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-212ENST00000597995 GTF3C4Q9UKN8 822 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 PCDHB13Q9Y5F0 798 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 EML5Q05BV3 1969 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 PFKLP17858 780 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 ACAT1P24752 427 aaKnown RBP13.41□□□□□ -0.26
TRIM28-212ENST00000597995 MAGEA11P43364 429 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 PDE6CP51160 858 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 RBP5P82980 135 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 USP4Q13107 963 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 ALCAMQ13740 583 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 DMC1Q14565 340 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 EML3Q32P44 896 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 FAM171BQ6P995 826 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 C11orf74Q86VG3 221 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 KIAA1958Q8N8K9 716 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 STKLD1Q8NE28 680 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 GLIS3Q8NEA6 775 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 ZSWIM2Q8NEG5 633 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 RPLP0P6Q8NHW5 317 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 EZH1Q92800 747 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-212ENST00000597995 HHIPQ96QV1 700 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 SLC22A12Q96S37 553 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 CYP2S1Q96SQ9 504 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 TRPC7Q9HCX4 862 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 GCNT4Q9P109 453 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 SNX9Q9Y5X1 595 aa13.41□□□□□ -0.26
TRIM28-212ENST00000597995 KIAA0391O15091 583 aaKnown RBP13.4□□□□□ -0.26
TRIM28-212ENST00000597995 CUTAO60888 179 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 GCNT3O95395 438 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 CKMP06732 381 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 HDCP19113 662 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 KCNA4P22459 653 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 RNF43Q68DV7 783 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 NAIF1Q69YI7 327 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-212ENST00000597995 C4orf50Q6ZRC1 276 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 OSTM1Q86WC4 334 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 ADGRF2Q8IZF7 708 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 SYCP3Q8IZU3 236 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 HPS3Q969F9 1004 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 SAAL1Q96ER3 474 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 SPATA17Q96L03 361 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 KBTBD4Q9NVX7 518 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 POLR3BQ9NW08 1133 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-212ENST00000597995 SIX4Q9UIU6 781 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 ARHGAP26Q9UNA1 814 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 ZDHHC9Q9Y397 364 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 WNT6Q9Y6F9 365 aa13.4□□□□□ -0.26
TRIM28-212ENST00000597995 BCLAF3A2AJT9 711 aaKnown RBP13.39□□□□□ -0.27
TRIM28-212ENST00000597995 KCNK5O95279 499 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 CAVIN2O95810 425 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 HSP90AA1P07900 732 aaKnown RBP13.39□□□□□ -0.27
TRIM28-212ENST00000597995 KRT19P08727 400 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 IDEP14735 1019 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 DNM1Q05193 864 aaKnown RBP13.39□□□□□ -0.27
TRIM28-212ENST00000597995 MYO1EQ12965 1108 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 PSMD2Q13200 908 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 KCNB1Q14721 858 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 MAPRE1Q15691 268 aaKnown RBP13.39□□□□□ -0.27
TRIM28-212ENST00000597995 SOWAHAQ2M3V2 549 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 USP39Q53GS9 565 aaKnown RBP13.39□□□□□ -0.27
TRIM28-212ENST00000597995 VSTM1Q6UX27 236 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 LIMS2Q7Z4I7 341 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 SCN4BQ8IWT1 228 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 ARL14EPQ8N8R7 260 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-212ENST00000597995 SH3RF2Q8TEC5 729 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 SMOC1Q9H4F8 434 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 PDE11AQ9HCR9 933 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 PANK4Q9NVE7 773 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 EHD2Q9NZN4 543 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 MAGEC2Q9UBF1 373 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-212ENST00000597995 PCDHA7Q9UN72 937 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 R3HCC1Q9Y3T6 440 aaKnown RBP13.39□□□□□ -0.27
TRIM28-212ENST00000597995 USP24Q9UPU5 2620 aa13.39□□□□□ -0.27
TRIM28-212ENST00000597995 ANAPC1Q9H1A4 1944 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms