RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 CDC25CP30307 473 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 MAGEA11P43364 429 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 LHX1P48742 406 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 MYL7Q01449 175 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 SMARCB1Q12824 385 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 PON2Q15165 354 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 NFE2Q16621 373 aaPredicted RBP11.21□□□□□ -0.61
LIG1-213ENST00000596672 GAB4Q2WGN9 574 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 MDH1BQ5I0G3 518 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 SPOPLQ6IQ16 392 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 DPH6Q7L8W6 267 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 SLC9A9Q8IVB4 645 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 SCN4BQ8IWT1 228 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 SPATA18Q8TC71 538 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 BPIFB1Q8TDL5 484 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 TMEM174Q8WUU8 243 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 TRMT2BQ96GJ1 504 aaKnown RBP11.21□□□□□ -0.61
LIG1-213ENST00000596672 SPATA32Q96LK8 384 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 NELL2Q99435 816 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 ZNF518BQ9C0D4 1074 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 KIAA1586Q9HCI6 787 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 OBP2AQ9NY56 170 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 FBXO4Q9UKT5 387 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 CFAP45Q9UL16 551 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 CDH9Q9ULB4 789 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 LAMA1P25391 3075 aa11.21□□□□□ -0.62
LIG1-213ENST00000596672 MAN2B1O00754 1011 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 LAMTOR5O43504 91 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 EXOC3O60645 756 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 STAU1O95793 577 aaKnown RBP11.2□□□□□ -0.62
LIG1-213ENST00000596672 RPN1P04843 607 aaKnown RBP11.2□□□□□ -0.62
LIG1-213ENST00000596672 CSH1P0DML2 217 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 CSH2P0DML3 217 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 PTPN1P18031 435 aaKnown RBP11.2□□□□□ -0.62
LIG1-213ENST00000596672 GNL1P36915 607 aaPredicted RBP11.2□□□□□ -0.62
LIG1-213ENST00000596672 MLLT6P55198 1093 aaPredicted RBP11.2□□□□□ -0.62
LIG1-213ENST00000596672 SNRPFP62306 86 aaKnown RBP11.2□□□□□ -0.62
LIG1-213ENST00000596672 MESP2Q0VG99 397 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 SRSF5Q13243 272 aaKnown RBP11.2□□□□□ -0.62
LIG1-213ENST00000596672 ORC1Q13415 861 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 CCINQ13939 588 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 VEPH1Q14D04 833 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 SURF1Q15526 300 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 ZNF77Q15935 545 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 ZNF528Q3MIS6 628 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 WDR72Q3MJ13 1102 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 FSTL4Q6MZW2 842 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 MAMSTRQ6ZN01 415 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 STXBP4Q6ZWJ1 553 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 SPATA2LQ8IUW3 424 aaPredicted RBP11.2□□□□□ -0.62
LIG1-213ENST00000596672 CELF5Q8N6W0 485 aaKnown RBP11.2□□□□□ -0.62
LIG1-213ENST00000596672 ARL14EPQ8N8R7 260 aaPredicted RBP11.2□□□□□ -0.62
LIG1-213ENST00000596672 MYCBPAPQ8TBZ2 947 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 WBP2Q969T9 261 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 E2F7Q96AV8 911 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 MMS19Q96T76 1030 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 RNF38Q9H0F5 515 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 LINC00597Q9H2U6 94 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 EBF3Q9H4W6 596 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.2□□□□□ -0.624e-7■■■■■ 83.2
LIG1-213ENST00000596672 MAPK8IP1Q9UQF2 711 aa11.2□□□□□ -0.62
LIG1-213ENST00000596672 RALGAPA1Q6GYQ0 2036 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 EPG5Q9HCE0 2579 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 F8VP50 259 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 SCAMP3O14828 347 aaKnown RBP11.19□□□□□ -0.62
LIG1-213ENST00000596672 HRO43593 1189 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 AKAP3O75969 853 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 BEST1O76090 585 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 RHOBTB3O94955 611 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 FGF19O95750 216 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 LMNAP02545 664 aaKnown RBP11.19□□□□□ -0.62
LIG1-213ENST00000596672 NR3C1P04150 777 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 CHRM1P11229 460 aaPredicted RBP11.19□□□□□ -0.62
LIG1-213ENST00000596672 PCSK1P29120 753 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 SYKP43405 635 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 KPNA1P52294 538 aaPredicted RBP11.19□□□□□ -0.62
LIG1-213ENST00000596672 MCCD1P59942 119 aaPredicted RBP11.19□□□□□ -0.62
LIG1-213ENST00000596672 RPL10AP62906 217 aaKnown RBP11.19□□□□□ -0.62
LIG1-213ENST00000596672 PPP3CAQ08209 521 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 MYO1EQ12965 1108 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 ZCWPW2Q504Y3 356 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 ARHGAP29Q52LW3 1261 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 ARHGAP15Q53QZ3 475 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 KRBA2Q6ZNG9 492 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 SV2AQ7L0J3 742 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 HS2ST1Q7LGA3 356 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 SFTPA1Q8IWL2 248 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 YAF2Q8IY57 180 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 SMYD4Q8IYR2 804 aaPredicted RBP11.19□□□□□ -0.62
LIG1-213ENST00000596672 CEP57L1Q8IYX8 460 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 FSIP1Q8NA03 581 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 ZMIZ2Q8NF64 920 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 ERCC4Q92889 916 aaPredicted RBP11.19□□□□□ -0.62
LIG1-213ENST00000596672 EEF2KMTQ96G04 330 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 FUBP3Q96I24 572 aaKnown RBP eCLIP11.19□□□□□ -0.62
LIG1-213ENST00000596672 SPATA17Q96L03 361 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 TWNKQ96RR1 684 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 KCNK16Q96T55 309 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 TTLL2Q9BWV7 592 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 VRTNQ9H8Y1 702 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms