RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 GPD1LQ8N335 351 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 TOP6BLQ8N6T0 577 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 LINC00301Q8NCQ3 95 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 USP13Q92995 863 aaPredicted RBP11.17□□□□□ -0.62
VPS4B-207ENST00000591519 TRMT2BQ96GJ1 504 aaKnown RBP11.17□□□□□ -0.62
VPS4B-207ENST00000591519 FUBP3Q96I24 572 aaKnown RBP eCLIP11.17□□□□□ -0.62
VPS4B-207ENST00000591519 PI4K2AQ9BTU6 479 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 FGFBP2Q9BYJ0 223 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 LRRC27Q9C0I9 530 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 TNMDQ9H2S6 317 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 KIF9Q9HAQ2 790 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 PDE11AQ9HCR9 933 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 RBM12Q9NTZ6 932 aaKnown RBP11.17□□□□□ -0.62
VPS4B-207ENST00000591519 SIX4Q9UIU6 781 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 GTF3C4Q9UKN8 822 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 MED19A0JLT2 244 aaPredicted RBP11.16□□□□□ -0.62
VPS4B-207ENST00000591519 GOLGA8IPA6NC78 632 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 ZNF233A6NK53 670 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 GOLGA8JA6NMD2 632 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 TRDMT1O14717 391 aaKnown RBP11.16□□□□□ -0.62
VPS4B-207ENST00000591519 PPP6R2O75170 966 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 PRPF40AO75400 957 aaKnown RBP11.16□□□□□ -0.62
VPS4B-207ENST00000591519 NOL4O94818 638 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 PRPF6O94906 941 aaKnown RBP11.16□□□□□ -0.62
VPS4B-207ENST00000591519 RETP07949 1114 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 FAM163BP0C2L3 166 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 CYP2F1P24903 491 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 HOXD13P35453 343 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 AVPR1AP37288 418 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 CDR1P51861 262 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 RUNX3Q13761 415 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 PON2Q15165 354 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 SURF1Q15526 300 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 TMEM196Q5HYL7 178 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 PLA2G2CQ5R387 149 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 TXNDC8Q6A555 127 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 Q6ZS52 159 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 STXBP4Q6ZWJ1 553 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 MAB21L3Q8N8X9 362 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 ZNF507Q8TCN5 953 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 CHAMP1Q96JM3 812 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 CEP295NLQ96MC4 621 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 ZNF396Q96N95 335 aaPredicted RBP11.16□□□□□ -0.62
VPS4B-207ENST00000591519 SMG9Q9H0W8 520 aaKnown RBP11.16□□□□□ -0.62
VPS4B-207ENST00000591519 CUEDC2Q9H467 287 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 PCIF1Q9H4Z3 704 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 KIAA1586Q9HCI6 787 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 PARD6AQ9NPB6 346 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 HPS4Q9NQG7 708 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 INTS13Q9NVM9 706 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 UXTQ9UBK9 157 aaPredicted RBP11.16□□□□□ -0.62
VPS4B-207ENST00000591519 GMEB2Q9UKD1 530 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 RAB23Q9ULC3 237 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 SNX9Q9Y5X1 595 aa11.16□□□□□ -0.62
VPS4B-207ENST00000591519 KIF26AQ9ULI4 1882 aaPredicted RBP11.15□□□□□ -0.62
VPS4B-207ENST00000591519 CCDC163A0A0D9SF12 145 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 OTOL1A6NHN0 477 aaPredicted RBP11.15□□□□□ -0.62
VPS4B-207ENST00000591519 CHURC1-FNTBB4DL54 471 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 PCSK1P29120 753 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 MAGEA11P43364 429 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 FNTBP49356 437 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 GPR15P49685 360 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 ATXN1P54253 815 aaKnown RBP11.15□□□□□ -0.62
VPS4B-207ENST00000591519 AMPD3Q01432 767 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 AMPD2Q01433 879 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 DMWDQ09019 674 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 BFSP1Q12934 665 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 SIM2Q14190 667 aaPredicted RBP11.15□□□□□ -0.62
VPS4B-207ENST00000591519 DDR2Q16832 855 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 DUOXA2Q1HG44 320 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 PKDCCQ504Y2 493 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 EPM2AIP1Q7L775 607 aaPredicted RBP11.15□□□□□ -0.62
VPS4B-207ENST00000591519 OSTM1Q86WC4 334 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 PDILTQ8N807 584 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 TTC8Q8TAM2 541 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 MRPS31Q92665 395 aaKnown RBP11.15□□□□□ -0.62
VPS4B-207ENST00000591519 CHFRQ96EP1 664 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 TRIM9Q9C026 710 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 MTMR12Q9C0I1 747 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 C2orf42Q9NWW7 574 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 CCL26Q9Y258 94 aa11.15□□□□□ -0.62
VPS4B-207ENST00000591519 ZNF638Q14966 1978 aaKnown RBP11.14□□□□□ -0.63
VPS4B-207ENST00000591519 SPTLC2O15270 562 aa11.14□□□□□ -0.63
VPS4B-207ENST00000591519 EIF3DO15371 548 aaKnown RBP eCLIP11.14□□□□□ -0.63
VPS4B-207ENST00000591519 ATG13O75143 517 aa11.14□□□□□ -0.63
VPS4B-207ENST00000591519 TADA3O75528 432 aa11.14□□□□□ -0.63
VPS4B-207ENST00000591519 KRT19P08727 400 aa11.14□□□□□ -0.63
VPS4B-207ENST00000591519 TMEM191BP0C7N4 346 aa11.14□□□□□ -0.63
VPS4B-207ENST00000591519 PDIA4P13667 645 aaKnown RBP11.14□□□□□ -0.63
VPS4B-207ENST00000591519 TCF3P15923 654 aa11.14□□□□□ -0.63
VPS4B-207ENST00000591519 ACAT1P24752 427 aaKnown RBP11.14□□□□□ -0.63
VPS4B-207ENST00000591519 SNRPFP62306 86 aaKnown RBP11.14□□□□□ -0.63
VPS4B-207ENST00000591519 DNM1Q05193 864 aaKnown RBP11.14□□□□□ -0.63
VPS4B-207ENST00000591519 FAM160A1Q05DH4 1040 aa11.14□□□□□ -0.63
VPS4B-207ENST00000591519 GRSF1Q12849 480 aaKnown RBP eCLIP11.14□□□□□ -0.63
VPS4B-207ENST00000591519 MYO1EQ12965 1108 aa11.14□□□□□ -0.63
VPS4B-207ENST00000591519 PDGFRLQ15198 375 aa11.14□□□□□ -0.63
VPS4B-207ENST00000591519 FSTL4Q6MZW2 842 aa11.14□□□□□ -0.63
VPS4B-207ENST00000591519 METTL3Q86U44 580 aaKnown RBP11.14□□□□□ -0.63
VPS4B-207ENST00000591519 WDR5BQ86VZ2 330 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms