RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 GDE1Q9NZC3 331 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 NUMBLQ9Y6R0 609 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 OBSL1O75147 1896 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 GREB1Q4ZG55 1949 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 NARSO43776 548 aaKnown RBP12□□□□□ -0.49
SMAD4-211ENST00000590499 VNN1O95497 513 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 HAPLN1P10915 354 aaPredicted RBP12□□□□□ -0.49
SMAD4-211ENST00000590499 WARSP23381 471 aaKnown RBP12□□□□□ -0.49
SMAD4-211ENST00000590499 ACAT1P24752 427 aaKnown RBP12□□□□□ -0.49
SMAD4-211ENST00000590499 PRCPP42785 496 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 LHX1P48742 406 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 MYL6P60660 151 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 MYL7Q01449 175 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 TSPY1Q01534 308 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 ENPEPQ07075 957 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 CCDC142Q17RM4 750 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 EDRF1Q3B7T1 1238 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 ZACNQ401N2 412 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 CEP135Q66GS9 1140 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 IQCEQ6IPM2 695 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 FAM171BQ6P995 826 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 PARM1Q6UWI2 310 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 PDZD4Q76G19 769 aaPredicted RBP12□□□□□ -0.49
SMAD4-211ENST00000590499 ZC3H3Q8IXZ2 948 aaKnown RBP12□□□□□ -0.49
SMAD4-211ENST00000590499 DCP1BQ8IZD4 617 aaKnown RBP12□□□□□ -0.49
SMAD4-211ENST00000590499 ELMOD1Q8N336 334 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 GPR161Q8N6U8 529 aaKnown RBP12□□□□□ -0.49
SMAD4-211ENST00000590499 SHKBP1Q8TBC3 707 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 ING5Q8WYH8 240 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 PSMG2Q969U7 264 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 ZNF512Q96ME7 567 aaPredicted RBP12□□□□□ -0.49
SMAD4-211ENST00000590499 RPP25Q9BUL9 199 aaKnown RBP12□□□□□ -0.49
SMAD4-211ENST00000590499 ASAH2Q9NR71 780 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 RAPGEFL1Q9UHV5 662 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 FRMD4BQ9Y2L6 1034 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 R3HCC1Q9Y3T6 440 aaKnown RBP12□□□□□ -0.49
SMAD4-211ENST00000590499 ASB3Q9Y575 518 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 NME7Q9Y5B8 376 aa12□□□□□ -0.49
SMAD4-211ENST00000590499 NUP210Q8TEM1 1887 aaPredicted RBP12□□□□□ -0.49
SMAD4-211ENST00000590499 RNF225M0QZC1 329 aaPredicted RBP11.99□□□□□ -0.49
SMAD4-211ENST00000590499 ZNF197O14709 1029 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 IKBKBO14920 756 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 TACC1O75410 805 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 SMC2O95347 1197 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 PDGFBP01127 241 aaPredicted RBP11.99□□□□□ -0.49
SMAD4-211ENST00000590499 FAM163BP0C2L3 166 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 FCARP24071 287 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 LMO2P25791 158 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 RPL13P26373 211 aaKnown RBP11.99□□□□□ -0.49
SMAD4-211ENST00000590499 PCSK1P29120 753 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 ATICP31939 592 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 ANP32AP39687 249 aaKnown RBP11.99□□□□□ -0.49
SMAD4-211ENST00000590499 ALDH1A3P47895 512 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 TUFMP49411 452 aaKnown RBP11.99□□□□□ -0.49
SMAD4-211ENST00000590499 CDR1P51861 262 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 EPHB3P54753 998 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 NFE2Q16621 373 aaPredicted RBP11.99□□□□□ -0.49
SMAD4-211ENST00000590499 MGAT5BQ3V5L5 792 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 CYP4A22Q5TCH4 519 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 MTSS1LQ765P7 747 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 DNAJB7Q7Z6W7 309 aaPredicted RBP11.99□□□□□ -0.49
SMAD4-211ENST00000590499 ADSSL1Q8N142 457 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 ST13P5Q8NFI4 369 aaPredicted RBP11.99□□□□□ -0.49
SMAD4-211ENST00000590499 SMARCE1Q969G3 411 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 SYAP1Q96A49 352 aaPredicted RBP11.99□□□□□ -0.49
SMAD4-211ENST00000590499 PBXIP1Q96AQ6 731 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 SEPT5Q99719 369 aaPredicted RBP11.99□□□□□ -0.49
SMAD4-211ENST00000590499 LPIN3Q9BQK8 851 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 MRPL45Q9BRJ2 306 aaKnown RBP11.99□□□□□ -0.49
SMAD4-211ENST00000590499 ZNF334Q9HCZ1 680 aaPredicted RBP11.99□□□□□ -0.49
SMAD4-211ENST00000590499 ABCB6Q9NP58 842 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 ABI2Q9NYB9 513 aaPredicted RBP11.99□□□□□ -0.49
SMAD4-211ENST00000590499 MAN1B1Q9UKM7 699 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 PCDHB5Q9Y5E4 795 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 F5P12259 2224 aa11.99□□□□□ -0.49
SMAD4-211ENST00000590499 MYBPHLA2RUH7 354 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 KINO60870 393 aaKnown RBP11.98□□□□□ -0.49
SMAD4-211ENST00000590499 ATP2C2O75185 946 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 ECI2O75521 394 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 SRFP11831 508 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 MYL4P12829 197 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 BMP6P22004 513 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 VAMP7P51809 220 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 PMS1P54277 932 aaKnown RBP11.98□□□□□ -0.49
SMAD4-211ENST00000590499 ADAM9Q13443 819 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 BIRC3Q13489 604 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 TRPC3Q13507 836 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 NCOA4Q13772 614 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 WDR72Q3MJ13 1102 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 CFAP221Q4G0U5 840 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 INTS8Q75QN2 995 aaKnown RBP11.98□□□□□ -0.49
SMAD4-211ENST00000590499 GAREM2Q75VX8 874 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 SV2AQ7L0J3 742 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 FAM186BQ8IYM0 893 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 FBXL6Q8N531 539 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 MCRS1Q96EZ8 462 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 FUBP3Q96I24 572 aaKnown RBP eCLIP11.98□□□□□ -0.49
SMAD4-211ENST00000590499 ZSWIM3Q96MP5 696 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 SYT15Q9BQS2 421 aa11.98□□□□□ -0.49
SMAD4-211ENST00000590499 MKNK1Q9BUB5 465 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms