RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 NUP210Q8TEM1 1887 aaPredicted RBP11.22□□□□□ -0.61
LIG3-212ENST00000590181 HPS3Q969F9 1004 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 CCDC127Q96BQ5 260 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 MMS19Q96T76 1030 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 SEPT5Q99719 369 aaPredicted RBP11.22□□□□□ -0.61
LIG3-212ENST00000590181 IMPG2Q9BZV3 1241 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 DNAJC25Q9H1X3 360 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 ATXN3LQ9H3M9 355 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 SLITRK6Q9H5Y7 841 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 BRD9Q9H8M2 597 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 PARD6AQ9NPB6 346 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 COMMD8Q9NX08 183 aa11.22□□□□□ -0.61
LIG3-212ENST00000590181 ABI2Q9NYB9 513 aaPredicted RBP11.22□□□□□ -0.61
LIG3-212ENST00000590181 GREB1Q4ZG55 1949 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 ZNF263O14978 683 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 MOSPD3O75425 235 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 ANXA13P27216 316 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 GABRR2P28476 465 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 ADAM9Q13443 819 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 STIM1Q13586 685 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 PPP2R5DQ14738 602 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 ZNF667Q5HYK9 610 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 TANGO2Q6ICL3 276 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 UNC93AQ86WB7 457 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 ARID3BQ8IVW6 561 aaPredicted RBP11.21□□□□□ -0.61
LIG3-212ENST00000590181 FMR1NBQ8N0W7 255 aaPredicted RBP11.21□□□□□ -0.61
LIG3-212ENST00000590181 CELF5Q8N6W0 485 aaKnown RBP11.21□□□□□ -0.61
LIG3-212ENST00000590181 SPATA20Q8TB22 786 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 SHKBP1Q8TBC3 707 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 MRPS31Q92665 395 aaKnown RBP11.21□□□□□ -0.61
LIG3-212ENST00000590181 NELL1Q92832 810 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 C8orf48Q96LL4 319 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 PKMYT1Q99640 499 aa11.21□□□□□ -0.61
LIG3-212ENST00000590181 FAM126AQ9BYI3 521 aaPredicted RBP11.21□□□□□ -0.61
LIG3-212ENST00000590181 A0A1W2PRU2 124 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 CETN3O15182 167 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 NOL4O94818 638 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 CST3P01034 146 aaPredicted RBP11.2□□□□□ -0.62
LIG3-212ENST00000590181 C4BPAP04003 597 aaKnown RBP11.2□□□□□ -0.62
LIG3-212ENST00000590181 ADRB1P08588 477 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 FCARP24071 287 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 AVPR1AP37288 418 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 CCR2P41597 374 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 VAMP7P51809 220 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 WNT7BP56706 349 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 NOP14P78316 857 aaKnown RBP11.2□□□□□ -0.62
LIG3-212ENST00000590181 LRRC63Q05C16 580 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 MTAPQ13126 283 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 BIRC3Q13489 604 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 NCOA4Q13772 614 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 LPAL2Q16609 132 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 ZACNQ401N2 412 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 ZNF658Q5TYW1 1059 aaPredicted RBP11.2□□□□□ -0.62
LIG3-212ENST00000590181 SMYD5Q6GMV2 418 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 GAREM2Q75VX8 874 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 MON1AQ86VX9 555 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 GRAMD1CQ8IYS0 662 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 HS6ST3Q8IZP7 471 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 CMTM8Q8IZV2 173 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 SYNPOQ8N3V7 929 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 CCDC26Q8TAB7 109 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 CSGALNACT1Q8TDX6 532 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 OVCA2Q8WZ82 227 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 CLDN23Q96B33 292 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 TCEAL4Q96EI5 215 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 TMEM209Q96SK2 561 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 TSG101Q99816 390 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 SYT15Q9BQS2 421 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 ELOVL4Q9GZR5 314 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 XYLT2Q9H1B5 865 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 CRISPLD1Q9H336 500 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 CYP3A43Q9HB55 503 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 ZNF334Q9HCZ1 680 aaPredicted RBP11.2□□□□□ -0.62
LIG3-212ENST00000590181 HEBP1Q9NRV9 189 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 GTF3C4Q9UKN8 822 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 RAB23Q9ULC3 237 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.2□□□□□ -0.62
LIG3-212ENST00000590181 BAHCC1Q9P281 2608 aa11.2□□□□□ -0.62
LIG3-212ENST00000590181 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.19□□□□□ -0.62
LIG3-212ENST00000590181 TULP1O00294 542 aaPredicted RBP11.19□□□□□ -0.62
LIG3-212ENST00000590181 F11P03951 625 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 TCF3P15923 654 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 HMGA1P17096 107 aaKnown RBP11.19□□□□□ -0.62
LIG3-212ENST00000590181 PTPN1P18031 435 aaKnown RBP11.19□□□□□ -0.62
LIG3-212ENST00000590181 ATF6P18850 670 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 NR2F2P24468 414 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 CASP1P29466 404 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 NLRP12P59046 1061 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 FKBP3Q00688 224 aaKnown RBP11.19□□□□□ -0.62
LIG3-212ENST00000590181 SPEM2Q0P670 501 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 TEAD2Q15562 447 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 ZNF699Q32M78 642 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 PPM1JQ5JR12 505 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 GPR158Q5T848 1215 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 LAIR1Q6GTX8 287 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 RALGPS2Q86X27 583 aaPredicted RBP11.19□□□□□ -0.62
LIG3-212ENST00000590181 PDZD8Q8NEN9 1154 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 ENGASEQ8NFI3 743 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 OR6B3Q8NGW1 331 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 NETO1Q8TDF5 533 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms