RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 TBKBP1A7MCY6 615 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 CCNT2O60583 730 aaKnown RBP8.67□□□□□ -1.02
VMP1-208ENST00000588617 ZBED4O75132 1171 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 CYP1A1P04798 512 aaPredicted RBP8.67□□□□□ -1.02
VMP1-208ENST00000588617 RPL13P26373 211 aaKnown RBP8.67□□□□□ -1.02
VMP1-208ENST00000588617 KRT17Q04695 432 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 RPS6KA2Q15349 733 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 BTBD16Q32M84 506 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 VWA3BQ502W6 1294 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 MAP3K21Q5TCX8 1036 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 HAUS3Q68CZ6 603 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 NBPF11Q86T75 865 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 NEIL1Q96FI4 390 aaPredicted RBP8.67□□□□□ -1.02
VMP1-208ENST00000588617 YTHDC1Q96MU7 727 aaKnown RBP8.67□□□□□ -1.02
VMP1-208ENST00000588617 SLC46A1Q96NT5 459 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 SPATA25Q9BR10 227 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 SGPP1Q9BX95 441 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 AGXT2Q9BYV1 514 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 SLC25A32Q9H2D1 315 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 BARX1Q9HBU1 254 aaPredicted RBP8.67□□□□□ -1.02
VMP1-208ENST00000588617 NOD2Q9HC29 1040 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 FAM30AQ9NZY2 134 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 ZDHHC9Q9Y397 364 aa8.67□□□□□ -1.02
VMP1-208ENST00000588617 LMTK3Q96Q04 1460 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 UBE2QL1A1L167 161 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 E7EVH7 732 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 F5H0A9 414 aaPredicted RBP8.66□□□□□ -1.02
VMP1-208ENST00000588617 HOXA3O43365 443 aaPredicted RBP8.66□□□□□ -1.02
VMP1-208ENST00000588617 RGS10O43665 173 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 TMCC2O75069 709 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 RTN3O95197 1032 aaPredicted RBP8.66□□□□□ -1.02
VMP1-208ENST00000588617 VIPP01282 170 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 HNRNPA1P09651 372 aaKnown RBP eCLIP8.66□□□□□ -1.02
VMP1-208ENST00000588617 RPS6KB1P23443 525 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 SLC6A2P23975 617 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 SATB1Q01826 763 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 TCF15Q12870 199 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 BMT2Q1RMZ1 405 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 CCDC96Q2M329 555 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 FAM214AQ32MH5 1076 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 ZNF750Q32MQ0 723 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 MGAT5BQ3V5L5 792 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 ATXN7L2Q5T6C5 722 aaPredicted RBP8.66□□□□□ -1.02
VMP1-208ENST00000588617 NFRKBQ6P4R8 1299 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 BBS12Q6ZW61 710 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 BRINP3Q76B58 766 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 ADGRE4PQ86SQ3 457 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 XYLT1Q86Y38 959 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 ANKRD52Q8NB46 1076 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 TDRD7Q8NHU6 1098 aaKnown RBP8.66□□□□□ -1.02
VMP1-208ENST00000588617 C7orf26Q96N11 449 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 SDF4Q9BRK5 362 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 ORC3Q9UBD5 711 aaPredicted RBP8.66□□□□□ -1.02
VMP1-208ENST00000588617 RRP7AQ9Y3A4 280 aaKnown RBP8.66□□□□□ -1.02
VMP1-208ENST00000588617 TTLL3Q9Y4R7 772 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 CDY1Q9Y6F8 540 aa8.66□□□□□ -1.02
VMP1-208ENST00000588617 TEX51A0A1B0GUA7 166 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 J3KTA2 159 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 ORC4O43929 436 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 PPP6R2O75170 966 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 STC2O76061 302 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 PLA2G1BP04054 148 aaKnown RBP8.65□□□□□ -1.02
VMP1-208ENST00000588617 SLC5A2P31639 672 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 ATXN1P54253 815 aaKnown RBP8.65□□□□□ -1.02
VMP1-208ENST00000588617 GPS1Q13098 491 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 BOP1Q14137 746 aaKnown RBP8.65□□□□□ -1.02
VMP1-208ENST00000588617 SLC9C2Q5TAH2 1124 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 MANEALQ5VSG8 457 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 ACAD10Q6JQN1 1059 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 ZNF280BQ86YH2 543 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 ABI1Q8IZP0 508 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 GPATCH11Q8N954 259 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 RABGGTAQ92696 567 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 TFAP2CQ92754 450 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 MED15Q96RN5 788 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 SLC46A2Q9BY10 475 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 MCOLN1Q9GZU1 580 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 VPS16Q9H269 839 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 DNMT3BQ9UBC3 853 aaKnown RBP8.65□□□□□ -1.02
VMP1-208ENST00000588617 C19orf53Q9UNZ5 99 aaPredicted RBP8.65□□□□□ -1.02
VMP1-208ENST00000588617 SHOC2Q9UQ13 582 aa8.65□□□□□ -1.02
VMP1-208ENST00000588617 PGPEP1LA6NFU8 196 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 POLRMTO00411 1230 aaKnown RBP8.64□□□□□ -1.03
VMP1-208ENST00000588617 DCLK1O15075 740 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 RAD52P43351 418 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 ATP1A4Q13733 1029 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 GRM4Q14833 912 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 CCNG2Q16589 344 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 PDXDC1Q6P996 788 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 ANKS1BQ7Z6G8 1248 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 ZFP28Q8NHY6 868 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 BPIFB1Q8TDL5 484 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 RSRC1Q96IZ7 334 aaKnown RBP8.64□□□□□ -1.03
VMP1-208ENST00000588617 FAM227BQ96M60 508 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 PWWP2AQ96N64 755 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 DIRC2Q96SL1 478 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 TREX2Q9BQ50 279 aaPredicted RBP8.64□□□□□ -1.03
VMP1-208ENST00000588617 PRKRIP1Q9H875 184 aaPredicted RBP8.64□□□□□ -1.03
VMP1-208ENST00000588617 SMYD2Q9NRG4 433 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 ADAM29Q9UKF5 820 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms