RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 TCTN3Q6NUS6 607 aa2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 SPRED1Q7Z699 444 aa2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 GLB1L2Q8IW92 636 aa2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 SYTL1Q8IYJ3 562 aa2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 PLBD2Q8NHP8 589 aa2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 HDAC10Q969S8 669 aa2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 MVB12AQ96EY5 273 aa2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 AIFM3Q96NN9 605 aa2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 GUCD1Q96NT3 240 aa2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 STRBPQ96SI9 672 aaKnown RBP2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 DUSP26Q9BV47 211 aa2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 LRRC27Q9C0I9 530 aa2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 PCED1AQ9H1Q7 454 aa2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 VTA1Q9NP79 307 aa2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 SLAMF7Q9NQ25 335 aa2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 CCM2LQ9NUG4 571 aaPredicted RBP2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 PPARGC1AQ9UBK2 798 aaKnown RBP2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 GJD2Q9UKL4 321 aa2.19□□□□□ -2.06
SMCHD1-211ENST00000584897 ZBED9Q6R2W3 1325 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 NDUFS2O75306 463 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 GNAI3P08754 354 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 HOXC6P09630 235 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 ZNF853P0CG23 659 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 IDEP14735 1019 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 PEX2P28328 305 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 RFC4P35249 363 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 TMPOP42166 694 aaKnown RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 MLLT6P55198 1093 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 GEMIN4P57678 1058 aaKnown RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 BPIFB4P59827 614 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 ZNF267Q14586 743 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 PLS1Q14651 629 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 PGS1Q32NB8 556 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 ZNF790Q6PG37 636 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 GRASPQ7Z6J2 395 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 PLXDC1Q8IUK5 500 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 GPC2Q8N158 579 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 FAM26EQ8N5C1 309 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 OR10H5Q8NGA6 315 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 SMCR8Q8TEV9 937 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 ZNF566Q969W8 418 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 PGBD4Q96DM1 585 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 COQ10AQ96MF6 247 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 FAM167BQ9BTA0 163 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 SLC46A2Q9BY10 475 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 AGO3Q9H9G7 860 aaKnown RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 SLC2A4RGQ9NR83 387 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 TLR9Q9NR96 1032 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 FEZ2Q9UHY8 353 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 EVLQ9UI08 416 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 PCDHGA2Q9Y5H1 932 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 SPO11Q9Y5K1 396 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 LRRC37AA6NMS7 1700 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 RPAP1Q9BWH6 1393 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 SLX4Q8IY92 1834 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 LRRC37A2A6NM11 1700 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 TGM5O43548 720 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 PRAMEF4O60810 478 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 HMMRO75330 724 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 LPLP06858 475 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 ALAS1P13196 640 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 GSPT1P15170 499 aaKnown RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 TM4SF1P30408 202 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 TM4SF4P48230 202 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 FKBP1BP68106 108 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 MRPS21P82921 87 aaKnown RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 DLX2Q07687 328 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 DDX10Q13206 875 aaKnown RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 PRKG1Q13976 671 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 NOMO1Q15155 1222 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 SPDYAQ5MJ70 313 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 LAIR1Q6GTX8 287 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 OTOP1Q7RTM1 612 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 STK32CQ86UX6 486 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 LIX1LQ8IVB5 337 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 ANKRD18AQ8IVF6 992 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 DRC7Q8IY82 874 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 ULK2Q8IYT8 1036 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 CMTM4Q8IZR5 234 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 LRTOMTQ8WZ04 291 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 EAF2Q96CJ1 260 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 PLEKHF1Q96S99 279 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 GDF15Q99988 308 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 NOL10Q9BSC4 688 aaKnown RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 GPR108Q9NPR9 543 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 POLR3BQ9NW08 1133 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 HECAQ9UBI9 543 aaPredicted RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 ITGB1BP2Q9UKP3 347 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 TPCN1Q9ULQ1 816 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 PTPN22Q9Y2R2 807 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 MYH14Q7Z406 1995 aaKnown RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 MAP3K15Q6ZN16 1313 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 USP42Q9H9J4 1324 aaKnown RBP2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 FAM227AF5H4B4 570 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 ARVCFO00192 962 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 IRAK2O43187 625 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 MSCO60682 206 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 KLHL18O94889 574 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 GASTP01350 101 aa2.18□□□□□ -2.06
SMCHD1-211ENST00000584897 SLC7A1P30825 629 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms