RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 PRKD2Q9BZL6 878 aa16.47■□□□□ 0.23
SS18-216ENST00000580751 ADAM7Q9H2U9 754 aa16.47■□□□□ 0.23
SS18-216ENST00000580751 ABHD10Q9NUJ1 306 aa16.47■□□□□ 0.23
SS18-216ENST00000580751 DNAJC12Q9UKB3 198 aa16.47■□□□□ 0.23
SS18-216ENST00000580751 KIAA1257Q9ULG3 409 aa16.47■□□□□ 0.23
SS18-216ENST00000580751 CNTN6Q9UQ52 1028 aa16.47■□□□□ 0.23
SS18-216ENST00000580751 SLC27A5Q9Y2P5 690 aa16.47■□□□□ 0.23
SS18-216ENST00000580751 SPTBN5Q9NRC6 3674 aaKnown RBP16.46■□□□□ 0.23
SS18-216ENST00000580751 CCDC195A0A1B0GUA6 201 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 PAEPP09466 180 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 KRT5P13647 590 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 KLK7P49862 253 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 EPHB3P54753 998 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 POLR2FP61218 127 aaKnown RBP16.46■□□□□ 0.23
SS18-216ENST00000580751 RPL10AP62906 217 aaKnown RBP16.46■□□□□ 0.23
SS18-216ENST00000580751 TWF1Q12792 350 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 SMAD4Q13485 552 aaKnown RBP16.46■□□□□ 0.23
SS18-216ENST00000580751 RAPGEF1Q13905 1077 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 VEPH1Q14D04 833 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 CLUL1Q15846 466 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 ARHGAP44Q17R89 818 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 PUS10Q3MIT2 529 aaKnown RBP16.46■□□□□ 0.23
SS18-216ENST00000580751 IQCEQ6IPM2 695 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 GPR149Q86SP6 731 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 FAM35AQ86V20 835 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 ELMOD1Q8N336 334 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 TTC9BQ8N6N2 239 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 C12orf76Q8N812 135 aaPredicted RBP16.46■□□□□ 0.23
SS18-216ENST00000580751 SHC3Q92529 594 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 ZNF707Q96C28 371 aaPredicted RBP16.46■□□□□ 0.23
SS18-216ENST00000580751 SMARCD1Q96GM5 515 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 HEXIM2Q96MH2 286 aaKnown RBP16.46■□□□□ 0.23
SS18-216ENST00000580751 MED10Q9BTT4 135 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 B3GNT5Q9BYG0 378 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 S1PR5Q9H228 398 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 FAM49BQ9NUQ9 324 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 AIPL1Q9NZN9 384 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 FHOD1Q9Y613 1164 aa16.46■□□□□ 0.23
SS18-216ENST00000580751 BZW2Q9Y6E2 419 aaKnown RBP16.46■□□□□ 0.23
SS18-216ENST00000580751 TRIM66O15016 1216 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 CCL16O15467 120 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 CCDC130P13994 396 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 CD19P15391 556 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 BDNFP23560 247 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 CYP2F1P24903 491 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 ANXA13P27216 316 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 CDR1P51861 262 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 ZNF132P52740 706 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 JAM2P57087 298 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 MEA1Q16626 185 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 ITIH5Q86UX2 942 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 TMTC1Q8IUR5 882 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 FUKQ8N0W3 1084 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 C12orf29Q8N999 325 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 SLC2A14Q8TDB8 520 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 CPLX3Q8WVH0 158 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 SMG7Q92540 1137 aaKnown RBP16.45■□□□□ 0.22
SS18-216ENST00000580751 CYFIP2Q96F07 1278 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 CEP295NLQ96MC4 621 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 RIPOR3Q96MK2 946 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 NECTIN4Q96NY8 510 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 SPAG5Q96R06 1193 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 HNRNPABQ99729 332 aaKnown RBP16.45■□□□□ 0.22
SS18-216ENST00000580751 LPIN3Q9BQK8 851 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 APOL5Q9BWW9 433 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 ZNF518BQ9C0D4 1074 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 PIDD1Q9HB75 910 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 PRDM6Q9NQX0 595 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 FAM50BQ9Y247 325 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 ASB3Q9Y575 518 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 PTPRDP23468 1912 aa16.45■□□□□ 0.22
SS18-216ENST00000580751 EPHB6O15197 1021 aa16.44■□□□□ 0.22
SS18-216ENST00000580751 FAM200BP0CF97 657 aa16.44■□□□□ 0.22
SS18-216ENST00000580751 VDRP11473 427 aa16.44■□□□□ 0.22
SS18-216ENST00000580751 ATF6P18850 670 aa16.44■□□□□ 0.22
SS18-216ENST00000580751 STAT1P42224 750 aa16.44■□□□□ 0.22
SS18-216ENST00000580751 MTHFRP42898 656 aa16.44■□□□□ 0.22
SS18-216ENST00000580751 PTPN21Q16825 1174 aa16.44■□□□□ 0.22
SS18-216ENST00000580751 SGO2Q562F6 1265 aa16.44■□□□□ 0.22
SS18-216ENST00000580751 ATAT1Q5SQI0 421 aa16.44■□□□□ 0.22
SS18-216ENST00000580751 ARHGAP17Q68EM7 881 aa16.44■□□□□ 0.22
SS18-216ENST00000580751 SCN4BQ8IWT1 228 aa16.44■□□□□ 0.22
SS18-216ENST00000580751 ZNF512Q96ME7 567 aaPredicted RBP16.44■□□□□ 0.22
SS18-216ENST00000580751 BAG1Q99933 345 aaPredicted RBP16.44■□□□□ 0.22
SS18-216ENST00000580751 DMAP1Q9NPF5 467 aaPredicted RBP16.44■□□□□ 0.22
SS18-216ENST00000580751 KRT82Q9NSB4 513 aa16.44■□□□□ 0.22
SS18-216ENST00000580751 AJAP1Q9UKB5 411 aaPredicted RBP16.44■□□□□ 0.22
SS18-216ENST00000580751 USP15Q9Y4E8 981 aaPredicted RBP16.44■□□□□ 0.22
SS18-216ENST00000580751 CLDN5O00501 218 aa16.43■□□□□ 0.22
SS18-216ENST00000580751 MBTPS2O43462 519 aa16.43■□□□□ 0.22
SS18-216ENST00000580751 AP1G2O75843 785 aa16.43■□□□□ 0.22
SS18-216ENST00000580751 SOAT2O75908 522 aa16.43■□□□□ 0.22
SS18-216ENST00000580751 FERP16591 822 aa16.43■□□□□ 0.22
SS18-216ENST00000580751 ADORA2BP29275 332 aa16.43■□□□□ 0.22
SS18-216ENST00000580751 GRIK1P39086 918 aa16.43■□□□□ 0.22
SS18-216ENST00000580751 USP8P40818 1118 aa16.43■□□□□ 0.22
SS18-216ENST00000580751 ADKP55263 362 aaKnown RBP16.43■□□□□ 0.22
SS18-216ENST00000580751 TFF2Q03403 129 aa16.43■□□□□ 0.22
SS18-216ENST00000580751 DRAP1Q14919 205 aaPredicted RBP16.43■□□□□ 0.22
SS18-216ENST00000580751 STILQ15468 1287 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms