RNA–Protein interactions for RNA: ENST00000578317.5

COPS3-215, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 1,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-215ENST00000578317 PAEPP09466 180 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 LINC00271P0C7V0 271 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 ODC1P11926 461 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 GNL1P36915 607 aaPredicted RBP8.53□□□□□ -1.04
COPS3-215ENST00000578317 CDH8P55286 799 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 CTC1Q2NKJ3 1217 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 PAN2Q504Q3 1202 aaKnown RBP8.53□□□□□ -1.04
COPS3-215ENST00000578317 C9orf50Q5SZB4 431 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 HGSNATQ68CP4 663 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 DSTYKQ6XUX3 929 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 TMCO2Q7Z6W1 182 aaPredicted RBP8.53□□□□□ -1.04
COPS3-215ENST00000578317 ZNF677Q86XU0 584 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 TMTC1Q8IUR5 882 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 CCDC170Q8IYT3 715 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 RNF168Q8IYW5 571 aaPredicted RBP8.53□□□□□ -1.04
COPS3-215ENST00000578317 PDCL2Q8N4E4 241 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 FIBCD1Q8N539 461 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 CCDC112Q8NEF3 446 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 WHAMMQ8TF30 809 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 KBTBD7Q8WVZ9 684 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 ELMO3Q96BJ8 720 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 IFT43Q96FT9 208 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 OXCT2Q9BYC2 517 aaPredicted RBP8.53□□□□□ -1.04
COPS3-215ENST00000578317 DNAI2Q9GZS0 605 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 SDCBP2Q9H190 292 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 SMYD3Q9H7B4 428 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 MARCH5Q9NX47 278 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 CACNG4Q9UBN1 327 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 L1RE1Q9UN81 338 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 STXBP5LQ9Y2K9 1186 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 PCDHB4Q9Y5E5 795 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 CEP290O15078 2479 aa8.53□□□□□ -1.04
COPS3-215ENST00000578317 SF3B1O75533 1304 aaKnown RBP eCLIP8.52□□□□□ -1.043e-6■■■■■ 137.9
COPS3-215ENST00000578317 H0YGN5 161 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 SCAMP3O14828 347 aaKnown RBP8.52□□□□□ -1.05
COPS3-215ENST00000578317 ST8SIA5O15466 376 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 CYP26A1O43174 497 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 SPINT1O43278 529 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 GFPT2O94808 682 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 ITGB1P05556 798 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 PTMAP06454 111 aaKnown RBP8.52□□□□□ -1.05
COPS3-215ENST00000578317 CYP11B1P15538 503 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 FGFR3P22607 806 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 PPM1AP35813 382 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 RAD23BP54727 409 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 LAPTM4AQ15012 233 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 ASIC2Q16515 512 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 WSCD1Q658N2 575 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 E4F1Q66K89 784 aaPredicted RBP8.52□□□□□ -1.05
COPS3-215ENST00000578317 TMEM214Q6NUQ4 689 aaKnown RBP8.52□□□□□ -1.05
COPS3-215ENST00000578317 FAM117BQ6P1L5 589 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 MRPL14Q6P1L8 145 aaKnown RBP8.52□□□□□ -1.05
COPS3-215ENST00000578317 TMEM270Q6UE05 265 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 CYP26C1Q6V0L0 522 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 TMEM139Q8IV31 216 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 ADGRF2Q8IZF7 708 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 SLC39A11Q8N1S5 342 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 EDEM1Q92611 657 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 RABGGTAQ92696 567 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 TMEM176AQ96HP8 235 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 IGSF21Q96ID5 467 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 RNPC3Q96LT9 517 aaKnown RBP8.52□□□□□ -1.05
COPS3-215ENST00000578317 ZNF558Q96NG5 402 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 BAG1Q99933 345 aaPredicted RBP8.52□□□□□ -1.05
COPS3-215ENST00000578317 ACBD6Q9BR61 282 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 MRPL45Q9BRJ2 306 aaKnown RBP8.52□□□□□ -1.05
COPS3-215ENST00000578317 SYT11Q9BT88 431 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 NT5C1AQ9BXI3 368 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 UBE2OQ9C0C9 1292 aaKnown RBP8.52□□□□□ -1.05
COPS3-215ENST00000578317 CHST7Q9NS84 486 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 SPG21Q9NZD8 308 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 PRG3Q9Y2Y8 225 aaPredicted RBP8.52□□□□□ -1.05
COPS3-215ENST00000578317 PCDHB12Q9Y5F1 795 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 MRPL42Q9Y6G3 142 aaKnown RBP8.52□□□□□ -1.05
COPS3-215ENST00000578317 SCN5AQ14524 2016 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 PDE4DIPQ5VU43 2346 aa8.52□□□□□ -1.05
COPS3-215ENST00000578317 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.51□□□□□ -1.05
COPS3-215ENST00000578317 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.51□□□□□ -1.05
COPS3-215ENST00000578317 F8W810 466 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 NRDCO43847 1150 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 PDGFAP04085 211 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 RB1P06400 928 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 KRT5P13647 590 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 PCSK2P16519 638 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 PCSK1P29120 753 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 BRCC3P46736 316 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 NDST1P52848 882 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 GOLGA8FQ08AF8 430 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 GOLGA8DPQ0D2H9 430 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 KLHL30Q0D2K2 578 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 ASTE1Q2TB18 679 aaPredicted RBP8.51□□□□□ -1.05
COPS3-215ENST00000578317 FUT10Q6P4F1 479 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.51□□□□□ -1.05
COPS3-215ENST00000578317 METTL23Q86XA0 190 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 COLGALT1Q8NBJ5 622 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 SLC4A11Q8NBS3 891 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 RBBP8NLQ8NC74 664 aaPredicted RBP8.51□□□□□ -1.05
COPS3-215ENST00000578317 RHBDD1Q8TEB9 315 aa8.51□□□□□ -1.05
COPS3-215ENST00000578317 DDX1Q92499 740 aaKnown RBP8.51□□□□□ -1.05
COPS3-215ENST00000578317 TNIP3Q96KP6 325 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms