RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 GJA5P36382 358 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 GPD2P43304 727 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 OTUD4Q01804 1114 aaKnown RBP10.59□□□□□ -0.71
VPS53-220ENST00000576149 ACAP1Q15027 740 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 KYAT1Q16773 422 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 ZNF792Q3KQV3 632 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 ILDR2Q71H61 639 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 TDRPQ86YL5 185 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 ANKRD42Q8N9B4 389 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 PPTC7Q8NI37 304 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 PRCCQ92733 491 aaPredicted RBP10.59□□□□□ -0.71
VPS53-220ENST00000576149 HPDLQ96IR7 371 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 PPP1R16BQ96T49 567 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 SAE1Q9UBE0 346 aaPredicted RBP10.59□□□□□ -0.71
VPS53-220ENST00000576149 AKT3Q9Y243 479 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 COL1A2P08123 1366 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 EXOC1LA0A1B0GW35 172 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 SNX3O60493 162 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 VTNP04004 478 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 CYP2C8P10632 490 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 SCTRP47872 440 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 DYNLT1P63172 113 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 INCA1Q0VD86 236 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 MYO1EQ12965 1108 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 FASTKD3Q14CZ7 662 aaKnown RBP10.58□□□□□ -0.72
VPS53-220ENST00000576149 USP50Q70EL3 339 aaPredicted RBP10.58□□□□□ -0.72
VPS53-220ENST00000576149 PCGF5Q86SE9 256 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 SRRM1Q8IYB3 904 aaKnown RBP10.58□□□□□ -0.72
VPS53-220ENST00000576149 CMASQ8NFW8 434 aaPredicted RBP10.58□□□□□ -0.72
VPS53-220ENST00000576149 MICAL1Q8TDZ2 1067 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 ZC3H15Q8WU90 426 aaKnown RBP10.58□□□□□ -0.72
VPS53-220ENST00000576149 EMID1Q96A84 441 aaPredicted RBP10.58□□□□□ -0.72
VPS53-220ENST00000576149 C16orf70Q9BSU1 422 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 VTA1Q9NP79 307 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 AGAP1Q9UPQ3 857 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 FARP1Q9Y4F1 1045 aaPredicted RBP10.58□□□□□ -0.72
VPS53-220ENST00000576149 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.58□□□□□ -0.72
VPS53-220ENST00000576149 RBM47A0AV96 593 aaKnown RBP10.58□□□□□ -0.72
VPS53-220ENST00000576149 TCP11X1B4DZS4 312 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 RASA4BC9J798 803 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 M0QYV0 167 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 RASA4O43374 803 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 STAU1O95793 577 aaKnown RBP10.58□□□□□ -0.72
VPS53-220ENST00000576149 OAS1P00973 400 aaKnown RBP10.58□□□□□ -0.72
VPS53-220ENST00000576149 CD48P09326 243 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 MIPP30301 263 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 HNRNPH1P31943 449 aaKnown RBP10.58□□□□□ -0.72
VPS53-220ENST00000576149 PSMC4P43686 418 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 GDF10P55107 478 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 NR1H3Q13133 447 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 SNAPC2Q13487 334 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 TMEM132DQ14C87 1099 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 ARHGEF18Q6ZSZ5 1173 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 CENPUQ71F23 418 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 TAX1BP1Q86VP1 789 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 AFG1LQ8WV93 481 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 HEXIM2Q96MH2 286 aaKnown RBP10.58□□□□□ -0.72
VPS53-220ENST00000576149 FAM124BQ9H5Z6 455 aaPredicted RBP10.58□□□□□ -0.72
VPS53-220ENST00000576149 MLXIPLQ9NP71 852 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 PCSK1NQ9UHG2 260 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 ITGA11Q9UKX5 1188 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 BARX2Q9UMQ3 279 aaPredicted RBP10.58□□□□□ -0.72
VPS53-220ENST00000576149 C2CD2Q9Y426 696 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 EVPLQ92817 2033 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 ZSWIM8A7E2V4 1837 aa10.58□□□□□ -0.72
VPS53-220ENST00000576149 TSPAN1O60635 241 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 RASSF9O75901 435 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 RNF8O76064 485 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 TRUB2O95900 331 aaKnown RBP10.57□□□□□ -0.72
VPS53-220ENST00000576149 ZNF286BP0CG31 522 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 RBP5P82980 135 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 TMED2Q15363 201 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 LDLRAD1Q5T700 205 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 MAP1SQ66K74 1059 aaPredicted RBP10.57□□□□□ -0.72
VPS53-220ENST00000576149 MTHFD1LQ6UB35 978 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 ZBED8Q8IZ13 594 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 KCTD6Q8NC69 237 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 GPRC5AQ8NFJ5 357 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 GTF3C2Q8WUA4 911 aaPredicted RBP10.57□□□□□ -0.72
VPS53-220ENST00000576149 ACAP3Q96P50 834 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 PHACTR1Q9C0D0 580 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 UBN1Q9NPG3 1134 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 FGFR1OP2Q9NVK5 253 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 NKIRAS1Q9NYS0 192 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 PNMA3Q9UL41 463 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 USP18Q9UMW8 372 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 A0A1B0GUA9 196 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 ADORA2AP29274 412 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 PCK1P35558 622 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 CTCFP49711 727 aaPredicted RBP10.57□□□□□ -0.72
VPS53-220ENST00000576149 ZNF143P52747 638 aaPredicted RBP10.57□□□□□ -0.72
VPS53-220ENST00000576149 NDST1P52848 882 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 CCNA1P78396 465 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 SF3A3Q12874 501 aaKnown RBP eCLIP10.57□□□□□ -0.72
VPS53-220ENST00000576149 PDIA2Q13087 525 aaKnown RBP10.57□□□□□ -0.72
VPS53-220ENST00000576149 TAF5Q15542 800 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 HP1BP3Q5SSJ5 553 aaPredicted RBP10.57□□□□□ -0.72
VPS53-220ENST00000576149 FAM102AQ5T9C2 384 aaPredicted RBP10.57□□□□□ -0.72
VPS53-220ENST00000576149 LCLAT1Q6UWP7 414 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 PPP1R21Q6ZMI0 780 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms