RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 MSLNLQ96KJ4 702 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 C8orf48Q96LL4 319 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 NUCKS1Q9H1E3 243 aaKnown RBP19.28■□□□□ 0.68
CCDC40-213ENST00000574933 SFXN1Q9H9B4 322 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 TMEM30AQ9NV96 361 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 AIPL1Q9NZN9 384 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.28■□□□□ 0.68
CCDC40-213ENST00000574933 SLC27A5Q9Y2P5 690 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 GOLGA6L3A6NEY3 463 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 TRIM66O15016 1216 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 BRD2P25440 801 aaKnown RBP19.27■□□□□ 0.68
CCDC40-213ENST00000574933 CDC25BP30305 580 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 RPL10AP62906 217 aaKnown RBP19.27■□□□□ 0.68
CCDC40-213ENST00000574933 ARID5BQ14865 1188 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 PPM1LQ5SGD2 360 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 SLC47A2Q86VL8 602 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 ZMIZ2Q8NF64 920 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 SYN2Q92777 582 aaPredicted RBP19.27■□□□□ 0.68
CCDC40-213ENST00000574933 SPATA17Q96L03 361 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 MED10Q9BTT4 135 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 DUSP16Q9BY84 665 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 UBXN6Q9BZV1 441 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 GRPEL1Q9HAV7 217 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 PNPLA8Q9NP80 782 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 ACP6Q9NPH0 428 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 CLDND1Q9NY35 253 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 TSPAN16Q9UKR8 245 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 PCDHGC3Q9UN70 934 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 ASB3Q9Y575 518 aa19.27■□□□□ 0.68
CCDC40-213ENST00000574933 LRRC53A6NM62 1247 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 MED7O43513 233 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 AP1G2O75843 785 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 GFPT2O94808 682 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 CCDC172P0C7W6 258 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 FAM200BP0CF97 657 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 CYP11B1P15538 503 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 FERP16591 822 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 ATF6P18850 670 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 ADORA2BP29275 332 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 CACNA2D1P54289 1103 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 DLX2Q07687 328 aaPredicted RBP19.26■□□□□ 0.67
CCDC40-213ENST00000574933 CCDC85BQ15834 202 aaPredicted RBP19.26■□□□□ 0.67
CCDC40-213ENST00000574933 MGAT5BQ3V5L5 792 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 CLEC20AQ6ZU45 233 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 IRF2BP2Q7Z5L9 587 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 TTC30AQ86WT1 665 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 ZNF677Q86XU0 584 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 EPS8L1Q8TE68 723 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 DDX1Q92499 740 aaKnown RBP19.26■□□□□ 0.67
CCDC40-213ENST00000574933 ZNF707Q96C28 371 aaPredicted RBP19.26■□□□□ 0.67
CCDC40-213ENST00000574933 SEPT5Q99719 369 aaPredicted RBP19.26■□□□□ 0.67
CCDC40-213ENST00000574933 SMOQ99835 787 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 PRKD2Q9BZL6 878 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 DMAP1Q9NPF5 467 aaPredicted RBP19.26■□□□□ 0.67
CCDC40-213ENST00000574933 KRT82Q9NSB4 513 aa19.26■□□□□ 0.67
CCDC40-213ENST00000574933 NOCTQ9UK39 431 aaKnown RBP19.26■□□□□ 0.67
CCDC40-213ENST00000574933 LUC7L2Q9Y383 392 aaKnown RBP19.26■□□□□ 0.67
CCDC40-213ENST00000574933 THAP12O43422 761 aa19.25■□□□□ 0.67
CCDC40-213ENST00000574933 RFPL2O75678 378 aa19.25■□□□□ 0.67
CCDC40-213ENST00000574933 CALCAP01258 141 aa19.25■□□□□ 0.67
CCDC40-213ENST00000574933 NPR3P17342 541 aa19.25■□□□□ 0.67
CCDC40-213ENST00000574933 HNRNPH3P31942 346 aaKnown RBP19.25■□□□□ 0.67
CCDC40-213ENST00000574933 CASP14P31944 242 aa19.25■□□□□ 0.67
CCDC40-213ENST00000574933 PRKCIP41743 596 aa19.25■□□□□ 0.67
CCDC40-213ENST00000574933 ALDH1A3P47895 512 aa19.25■□□□□ 0.67
CCDC40-213ENST00000574933 BCAT1P54687 386 aa19.25■□□□□ 0.67
CCDC40-213ENST00000574933 TWF1Q12792 350 aa19.25■□□□□ 0.67
CCDC40-213ENST00000574933 GOLGA7BQ2TAP0 167 aa19.25■□□□□ 0.67
CCDC40-213ENST00000574933 SFMBT2Q5VUG0 894 aa19.25■□□□□ 0.67
CCDC40-213ENST00000574933 ZNF397Q8NF99 534 aaPredicted RBP19.25■□□□□ 0.67
CCDC40-213ENST00000574933 MAFAQ8NHW3 353 aaPredicted RBP19.25■□□□□ 0.67
CCDC40-213ENST00000574933 S1PR5Q9H228 398 aa19.25■□□□□ 0.67
CCDC40-213ENST00000574933 UBE2ZQ9H832 354 aaPredicted RBP19.25■□□□□ 0.67
CCDC40-213ENST00000574933 HESX1Q9UBX0 185 aa19.25■□□□□ 0.67
CCDC40-213ENST00000574933 CCDC195A0A1B0GUA6 201 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 F8VP50 259 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 SOAT2O75908 522 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 BEST1O76090 585 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 MICAL2O94851 1124 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 ADCY5O95622 1261 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 LRG1P02750 347 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 SETSIPP0DME0 302 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 GRIK1P39086 918 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 PDE6CP51160 858 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 CDR1P51861 262 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 EPHB3P54753 998 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 ITIH3Q06033 890 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 BST2Q10589 180 aaKnown RBP19.24■□□□□ 0.67
CCDC40-213ENST00000574933 E4F1Q66K89 784 aaPredicted RBP19.24■□□□□ 0.67
CCDC40-213ENST00000574933 TMC6Q7Z403 805 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.24■□□□□ 0.67
CCDC40-213ENST00000574933 GPR149Q86SP6 731 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 NOP9Q86U38 636 aaKnown RBP19.24■□□□□ 0.67
CCDC40-213ENST00000574933 PSMG2Q969U7 264 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 KCNK16Q96T55 309 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 LHX5Q9H2C1 402 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 IL37Q9NZH6 218 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 COG5Q9UP83 839 aa19.24■□□□□ 0.67
CCDC40-213ENST00000574933 HHLA1C9JL84 531 aa19.23■□□□□ 0.67
CCDC40-213ENST00000574933 TNFRSF10BO14763 440 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms