RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 RBP3P10745 1247 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 GNAZP19086 355 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 ELK3P41970 407 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 NAMPTP43490 491 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 CDH8P55286 799 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 PTK7Q13308 1070 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 FKBP1CQ5VVH2 108 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 EEPD1Q7L9B9 569 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 TTC7BQ86TV6 843 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 KIAA0319LQ8IZA0 1049 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 TTLL6Q8N841 843 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 CFAP36Q96G28 342 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 ACSS3Q9H6R3 686 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 POLIQ9UNA4 740 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 FARP1Q9Y4F1 1045 aaPredicted RBP17.91■□□□□ 0.46
VPS53-215ENST00000573028 GYG2O15488 501 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 SMNDC1O75940 238 aaKnown RBP eCLIP17.9■□□□□ 0.46
VPS53-215ENST00000573028 KLHL38Q2WGJ6 581 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 ZNF699Q32M78 642 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 MDH1BQ5I0G3 518 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 LRRC38Q5VT99 294 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 NIF3L1Q9GZT8 377 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 SNCAIPQ9Y6H5 919 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 MAFGO15525 162 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 FAM155BO75949 473 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 INHBAP08476 426 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 PYGBP11216 843 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 HSPA1LP34931 641 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 FAAP100Q0VG06 881 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 CAPSQ13938 189 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 HADHQ16836 314 aaKnown RBP17.9■□□□□ 0.46
VPS53-215ENST00000573028 KBTBD12Q3ZCT8 623 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 FAXCQ5TGI0 409 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 PCGF5Q86SE9 256 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 CADM1Q9BY67 442 aaKnown RBP17.9■□□□□ 0.46
VPS53-215ENST00000573028 PGAP2Q9UHJ9 254 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 STYXL1Q9Y6J8 313 aa17.9■□□□□ 0.46
VPS53-215ENST00000573028 LUC7L3O95232 432 aaKnown RBP17.89■□□□□ 0.46
VPS53-215ENST00000573028 MMRN1Q13201 1228 aa17.89■□□□□ 0.46
VPS53-215ENST00000573028 BLMHQ13867 455 aa17.89■□□□□ 0.46
VPS53-215ENST00000573028 ADGRD1Q6QNK2 874 aa17.89■□□□□ 0.46
VPS53-215ENST00000573028 ARFGAP1Q8N6T3 406 aa17.89■□□□□ 0.46
VPS53-215ENST00000573028 NAT8LQ8N9F0 302 aa17.89■□□□□ 0.46
VPS53-215ENST00000573028 SPATA18Q8TC71 538 aa17.89■□□□□ 0.46
VPS53-215ENST00000573028 TMEM120AQ9BXJ8 343 aa17.89■□□□□ 0.46
VPS53-215ENST00000573028 IQCGQ9H095 443 aaKnown RBP17.89■□□□□ 0.46
VPS53-215ENST00000573028 PSEN1P49768 467 aa17.89■□□□□ 0.45
VPS53-215ENST00000573028 ZNF132P52740 706 aa17.89■□□□□ 0.45
VPS53-215ENST00000573028 RCN1Q15293 331 aa17.89■□□□□ 0.45
VPS53-215ENST00000573028 DARS2Q6PI48 645 aaKnown RBP17.89■□□□□ 0.45
VPS53-215ENST00000573028 PAXIP1Q6ZW49 1069 aaPredicted RBP17.89■□□□□ 0.45
VPS53-215ENST00000573028 DCAKDQ8WVC6 231 aa17.89■□□□□ 0.45
VPS53-215ENST00000573028 SERAC1Q96JX3 654 aa17.89■□□□□ 0.45
VPS53-215ENST00000573028 CNTN6Q9UQ52 1028 aa17.89■□□□□ 0.45
VPS53-215ENST00000573028 NFASCO94856 1347 aa17.89■□□□□ 0.45
VPS53-215ENST00000573028 CCDC195A0A1B0GUA6 201 aa17.89■□□□□ 0.45
VPS53-215ENST00000573028 KBTBD13C9JR72 458 aa17.89■□□□□ 0.45
VPS53-215ENST00000573028 KDELR1P24390 212 aa17.89■□□□□ 0.45
VPS53-215ENST00000573028 SLC18A1P54219 525 aa17.89■□□□□ 0.45
VPS53-215ENST00000573028 CNTN2Q02246 1040 aa17.89■□□□□ 0.45
VPS53-215ENST00000573028 CDO1Q16878 200 aa17.89■□□□□ 0.45
VPS53-215ENST00000573028 NBPF12Q5TAG4 269 aaPredicted RBP17.89■□□□□ 0.45
VPS53-215ENST00000573028 BANPQ8N9N5 519 aa17.89■□□□□ 0.45
VPS53-215ENST00000573028 PRPF31Q8WWY3 499 aaKnown RBP17.89■□□□□ 0.45
VPS53-215ENST00000573028 MCF2LO15068 1137 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 KPNB1Q14974 876 aaKnown RBP17.88■□□□□ 0.45
VPS53-215ENST00000573028 TMEM132BQ14DG7 1078 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 LMNTD2Q8IXW0 634 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 LRRC71Q8N4P6 559 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 PPM1NQ8N819 430 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 CEP120Q8N960 986 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 CYTH2Q99418 400 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 DHX33Q9H6R0 707 aaKnown RBP17.88■□□□□ 0.45
VPS53-215ENST00000573028 CYLDQ9NQC7 956 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 CYTH4Q9UIA0 394 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 TCRBV5S1A1TA0A578 114 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 KRT36O76013 467 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 KITP10721 976 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 ESRRAP11474 423 aaPredicted RBP17.88■□□□□ 0.45
VPS53-215ENST00000573028 DUOXA2Q1HG44 320 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 TSNAXIP1Q2TAA8 658 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 PPP1R2P3Q6NXS1 205 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 XRRA1Q6P2D8 792 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 C1orf228Q6PIY5 440 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 DNAJC9Q8WXX5 260 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 CDHR1Q96JP9 859 aa17.88■□□□□ 0.45
VPS53-215ENST00000573028 MARCOQ9UEW3 520 aaPredicted RBP17.88■□□□□ 0.45
VPS53-215ENST00000573028 C3orf70A6NLC5 250 aaPredicted RBP17.87■□□□□ 0.45
VPS53-215ENST00000573028 H7C0C1 242 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 CCDC22O60826 627 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 LSM8O95777 96 aaKnown RBP17.87■□□□□ 0.45
VPS53-215ENST00000573028 ITGBL1O95965 494 aaPredicted RBP17.87■□□□□ 0.45
VPS53-215ENST00000573028 KRT7P08729 469 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 ATP5OP48047 213 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 ANO7Q6IWH7 933 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 C4orf50Q6ZRC1 276 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 SAMD7Q7Z3H4 446 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 BRSK2Q8IWQ3 736 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 MECRQ9BV79 373 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 SLC13A1Q9BZW2 595 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms