RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PRR23CQ6ZRP0 262 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 ADGRF2Q8IZF7 708 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 GPD1LQ8N335 351 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 TOP6BLQ8N6T0 577 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 LINC00301Q8NCQ3 95 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 SPATA18Q8TC71 538 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 INTS4Q96HW7 963 aaKnown RBP7.21□□□□□ -1.26
VPS53-213ENST00000572334 CNTNAP3BQ96NU0 1288 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 RTKNQ9BST9 563 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 BACH2Q9BYV9 841 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 CNTNAP3Q9BZ76 1288 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 PDCL3Q9H2J4 239 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 KIF9Q9HAQ2 790 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 RXFP3Q9NSD7 469 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 ZMYM5Q9UJ78 669 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 GMEB2Q9UKD1 530 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 MAGED2Q9UNF1 606 aaPredicted RBP7.21□□□□□ -1.26
VPS53-213ENST00000572334 EXOC7Q9UPT5 735 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 PCDHB13Q9Y5F0 798 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 SNX9Q9Y5X1 595 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 CEP295Q9C0D2 2601 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 ADAMTS9Q9P2N4 1935 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 CACNA1EQ15878 2313 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 CFAP47Q6ZTR5 3102 aa7.21□□□□□ -1.26
VPS53-213ENST00000572334 FRYQ5TBA9 3013 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 CCDC163A0A0D9SF12 145 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.2□□□□□ -1.26
VPS53-213ENST00000572334 HUS1O60921 280 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 RNF40O75150 1001 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 KRT19P08727 400 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 TCF3P15923 654 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 PDCP20941 246 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 WARSP23381 471 aaKnown RBP7.2□□□□□ -1.26
VPS53-213ENST00000572334 CASP1P29466 404 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 AVPR1AP37288 418 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 MAGEA11P43364 429 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 LHX1P48742 406 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 CACNA2D1P54289 1103 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 PSMC1P62191 440 aaKnown RBP7.2□□□□□ -1.26
VPS53-213ENST00000572334 RBP5P82980 135 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 MYL7Q01449 175 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 FAM160A1Q05DH4 1040 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 MESP2Q0VG99 397 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 ALCAMQ13740 583 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 MTF1Q14872 753 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 NFKBIBQ15653 356 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 PLA2G2CQ5R387 149 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 CNNM4Q6P4Q7 775 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 SHC4Q6S5L8 630 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 DPH6Q7L8W6 267 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 KBTBD6Q86V97 674 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 SYCP3Q8IZU3 236 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 PDILTQ8N807 584 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 ARL14EPQ8N8R7 260 aaPredicted RBP7.2□□□□□ -1.26
VPS53-213ENST00000572334 ZNF507Q8TCN5 953 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 PLEKHO2Q8TD55 490 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 NETO1Q8TDF5 533 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 CACTINQ8WUQ7 758 aaKnown RBP7.2□□□□□ -1.26
VPS53-213ENST00000572334 OSCP1Q8WVF1 389 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 GAB3Q8WWW8 586 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 ZNF516Q92618 1163 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 MRPS31Q92665 395 aaKnown RBP7.2□□□□□ -1.26
VPS53-213ENST00000572334 SECISBP2LQ93073 1101 aaKnown RBP7.2□□□□□ -1.26
VPS53-213ENST00000572334 MYLPFQ96A32 169 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 FUBP3Q96I24 572 aaKnown RBP eCLIP7.2□□□□□ -1.26
VPS53-213ENST00000572334 GCNAQ96QF7 691 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 MRPL45Q9BRJ2 306 aaKnown RBP7.2□□□□□ -1.26
VPS53-213ENST00000572334 TTLL2Q9BWV7 592 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 TRIM9Q9C026 710 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 LINC00597Q9H2U6 94 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 TMEM206Q9H813 350 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 ECT2Q9H8V3 914 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 UPF2Q9HAU5 1272 aaKnown RBP7.2□□□□□ -1.26
VPS53-213ENST00000572334 FOXD4L1Q9NU39 408 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 THG1LQ9NWX6 298 aaKnown RBP7.2□□□□□ -1.26
VPS53-213ENST00000572334 HSPBP1Q9NZL4 362 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 CDV3Q9UKY7 258 aaKnown RBP7.2□□□□□ -1.26
VPS53-213ENST00000572334 WNT6Q9Y6F9 365 aa7.2□□□□□ -1.26
VPS53-213ENST00000572334 SPEGQ15772 3267 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 AXIN1O15169 862 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 EIF3DO15371 548 aaKnown RBP eCLIP7.19□□□□□ -1.26
VPS53-213ENST00000572334 STX6O43752 255 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 PPP6R2O75170 966 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 EPN2O95208 641 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 OLFM2O95897 454 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 ADRB1P08588 477 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 HNRNPLP14866 589 aaKnown RBP eCLIP7.19□□□□□ -1.26
VPS53-213ENST00000572334 SDHBP21912 280 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 BDNFP23560 247 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 CLCN1P35523 988 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 OPRD1P41143 372 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 RPL10AP62906 217 aaKnown RBP7.19□□□□□ -1.26
VPS53-213ENST00000572334 PDGFRLQ15198 375 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 SF3A2Q15428 464 aaKnown RBP7.19□□□□□ -1.26
VPS53-213ENST00000572334 CCDC6Q16204 474 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 TAF12Q16514 161 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 TRAPPC11Q7Z392 1133 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.19□□□□□ -1.26
VPS53-213ENST00000572334 SPATA2LQ8IUW3 424 aaPredicted RBP7.19□□□□□ -1.26
VPS53-213ENST00000572334 WDR49Q8IV35 697 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms