RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 CYP27A1Q02318 531 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 PSMD2Q13200 908 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 WDR72Q3MJ13 1102 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 TDRD10Q5VZ19 366 aaKnown RBP11.57□□□□□ -0.56
VPS39-208ENST00000564994 ZC3H14Q6PJT7 736 aaKnown RBP11.57□□□□□ -0.56
VPS39-208ENST00000564994 C4orf50Q6ZRC1 276 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 ZBTB44Q8NCP5 570 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 OR6B3Q8NGW1 331 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 GOLGA5Q8TBA6 731 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 PARD3BQ8TEW8 1205 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 TMEM174Q8WUU8 243 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 MRPS31Q92665 395 aaKnown RBP11.57□□□□□ -0.56
VPS39-208ENST00000564994 CHFRQ96EP1 664 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 MSANTD3Q96H12 275 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 SLC22A12Q96S37 553 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 FAM83CQ9BQN1 747 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 GOLPH3LQ9H4A5 285 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 DPEP3Q9H4B8 488 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 C8orf33Q9H7E9 229 aaPredicted RBP11.57□□□□□ -0.56
VPS39-208ENST00000564994 GDPD2Q9HCC8 539 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 HPS4Q9NQG7 708 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 GKN1Q9NS71 199 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 RBM12Q9NTZ6 932 aaKnown RBP11.57□□□□□ -0.56
VPS39-208ENST00000564994 TDP1Q9NUW8 608 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 TMEM30AQ9NV96 361 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 MAGEC2Q9UBF1 373 aaPredicted RBP11.57□□□□□ -0.56
VPS39-208ENST00000564994 ZMYM5Q9UJ78 669 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 MYO16Q9Y6X6 1858 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 SOBPA7XYQ1 873 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 PDXKO00764 312 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 VNN1O95497 513 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 NR3C1P04150 777 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 MYL1P05976 194 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 FAM163BP0C2L3 166 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 USP46P62068 366 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 TNNC1P63316 161 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 PLCB2Q00722 1185 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 DPYDQ12882 1025 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 TRPC3Q13507 836 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 MAPRE1Q15691 268 aaKnown RBP11.56□□□□□ -0.56
VPS39-208ENST00000564994 MDH1BQ5I0G3 518 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 TRIM68Q6AZZ1 485 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 VSTM1Q6UX27 236 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 MAMSTRQ6ZN01 415 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 Q6ZS52 159 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 RALGPS2Q86X27 583 aaPredicted RBP11.56□□□□□ -0.56
VPS39-208ENST00000564994 FSIP1Q8NA03 581 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 SUMF1Q8NBK3 374 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 MYCBPAPQ8TBZ2 947 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 SPATA17Q96L03 361 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 CYP2S1Q96SQ9 504 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 SNX25Q9H3E2 840 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 SMYD3Q9H7B4 428 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 VRTNQ9H8Y1 702 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 GCNT4Q9P109 453 aa11.56□□□□□ -0.56
VPS39-208ENST00000564994 UXTQ9UBK9 157 aaPredicted RBP11.56□□□□□ -0.56
VPS39-208ENST00000564994 NXF1Q9UBU9 619 aaKnown RBP11.56□□□□□ -0.56
VPS39-208ENST00000564994 MYOFQ9NZM1 2061 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 A0A1W2PQ27 194 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 A0A1W2PQ64 194 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 A0A1W2PQD8 194 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 C2orf78A6NCI8 922 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 KINO60870 393 aaKnown RBP11.55□□□□□ -0.56
VPS39-208ENST00000564994 LILRB5O75023 590 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 PHACTR2O75167 634 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 RHOBTB3O94955 611 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 ARSAP15289 507 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 PTPN1P18031 435 aaKnown RBP11.55□□□□□ -0.56
VPS39-208ENST00000564994 ATICP31939 592 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 GRIK1P39086 918 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 RAP1GAPP47736 663 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 CDH8P55286 799 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 BIRC3Q13489 604 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 NCOA4Q13772 614 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 CCINQ13939 588 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 ZNF268Q14587 947 aaPredicted RBP11.55□□□□□ -0.56
VPS39-208ENST00000564994 PON2Q15165 354 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 ITPRIPL2Q3MIP1 535 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 C1orf220Q5T0J3 134 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 C1orf228Q6PIY5 440 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 KRBA2Q6ZNG9 492 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 ARL14EPQ8N8R7 260 aaPredicted RBP11.55□□□□□ -0.56
VPS39-208ENST00000564994 SYAP1Q96A49 352 aaPredicted RBP11.55□□□□□ -0.56
VPS39-208ENST00000564994 IER2Q9BTL4 223 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 B3GNT5Q9BYG0 378 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 ZNF518BQ9C0D4 1074 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 SCAND2PQ9GZW5 306 aaPredicted RBP11.55□□□□□ -0.56
VPS39-208ENST00000564994 SDCBP2Q9H190 292 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 EBF3Q9H4W6 596 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 KIF9Q9HAQ2 790 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 TRPC7Q9HCX4 862 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 C2orf42Q9NWW7 574 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 THG1LQ9NWX6 298 aaKnown RBP11.55□□□□□ -0.56
VPS39-208ENST00000564994 ZSCAN32Q9NX65 697 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 MAPK8IP1Q9UQF2 711 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 TRAF3IP3Q9Y228 551 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 PCDHGA2Q9Y5H1 932 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 KIAA1549LQ6ZVL6 1849 aa11.55□□□□□ -0.56
VPS39-208ENST00000564994 TRAV19A0A0A6YYK7 116 aa11.54□□□□□ -0.56
VPS39-208ENST00000564994 A8MXQ7 604 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms