RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 DMWDQ09019 674 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 CUL4BQ13620 913 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 KNOP1Q1ED39 458 aaKnown RBP17.34■□□□□ 0.37
SNX1-213ENST00000561026 VSTM1Q6UX27 236 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 C12orf56Q8IXR9 622 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 MYLPFQ96A32 169 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 CHFRQ96EP1 664 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 SPATA17Q96L03 361 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 CEP295NLQ96MC4 621 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 SLC22A12Q96S37 553 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 CYP2S1Q96SQ9 504 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 TRPC7Q9HCX4 862 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 C2orf42Q9NWW7 574 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 CGNQ9P2M7 1197 aaKnown RBP17.34■□□□□ 0.37
SNX1-213ENST00000561026 RCOR1Q9UKL0 485 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 TRAV19A0A0A6YYK7 116 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 CHURC1-FNTBB4DL54 471 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 TRDMT1O14717 391 aaKnown RBP17.33■□□□□ 0.36
SNX1-213ENST00000561026 HRO43593 1189 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 TACC1O75410 805 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 USP17L7P0C7H9 530 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 BDNFP23560 247 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 HOXA6P31267 233 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 GNL1P36915 607 aaPredicted RBP17.33■□□□□ 0.36
SNX1-213ENST00000561026 FNTBP49356 437 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 AMPD2Q01433 879 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 DNM1Q05193 864 aaKnown RBP17.33■□□□□ 0.36
SNX1-213ENST00000561026 GRSF1Q12849 480 aaKnown RBP eCLIP17.33■□□□□ 0.36
SNX1-213ENST00000561026 PUM1Q14671 1186 aaKnown RBP eCLIP17.33■□□□□ 0.36
SNX1-213ENST00000561026 PDGFRLQ15198 375 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 TMEM196Q5HYL7 178 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 FSIP1Q8NA03 581 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 MYCBPAPQ8TBZ2 947 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 ZNF516Q92618 1163 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 PCED1BQ96HM7 432 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 MRPL45Q9BRJ2 306 aaKnown RBP17.33■□□□□ 0.36
SNX1-213ENST00000561026 GZF1Q9H116 711 aaPredicted RBP17.33■□□□□ 0.36
SNX1-213ENST00000561026 DLL3Q9NYJ7 618 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 GCNT4Q9P109 453 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 GMEB2Q9UKD1 530 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 RAB23Q9ULC3 237 aa17.33■□□□□ 0.36
SNX1-213ENST00000561026 CKMP06732 381 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 SLFN14P0C7P3 912 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 ARSAP15289 507 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 TGM1P22735 817 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 CNR2P34972 360 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 GRIK1P39086 918 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 CYP27A1Q02318 531 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 MTF1Q14872 753 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 WDR72Q3MJ13 1102 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 FSTL4Q6MZW2 842 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 DGLUCYQ7Z3D6 616 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 LONP2Q86WA8 852 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 GRAMD1CQ8IYS0 662 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 CEP57L1Q8IYX8 460 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 ARL14EPQ8N8R7 260 aaPredicted RBP17.32■□□□□ 0.36
SNX1-213ENST00000561026 SNX25Q9H3E2 840 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 NME7Q9Y5B8 376 aa17.32■□□□□ 0.36
SNX1-213ENST00000561026 KIF26AQ9ULI4 1882 aaPredicted RBP17.31■□□□□ 0.36
SNX1-213ENST00000561026 C2orf78A6NCI8 922 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 EXOC3O60645 756 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 STAU1O95793 577 aaKnown RBP17.31■□□□□ 0.36
SNX1-213ENST00000561026 HDCP19113 662 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 MYL6P60660 151 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 TNNC1P63316 161 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 TRPC3Q13507 836 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 SIM2Q14190 667 aaPredicted RBP17.31■□□□□ 0.36
SNX1-213ENST00000561026 ZNF77Q15935 545 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 LPAL2Q16609 132 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 RSPO4Q2I0M5 234 aaPredicted RBP17.31■□□□□ 0.36
SNX1-213ENST00000561026 HEATR6Q6AI08 1181 aaKnown RBP17.31■□□□□ 0.36
SNX1-213ENST00000561026 LAIR1Q6GTX8 287 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 PRR23BQ6ZRT6 265 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 DENND5BQ6ZUT9 1274 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 SPRYD3Q8NCJ5 442 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 OR6B3Q8NGW1 331 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 OSCP1Q8WVF1 389 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 XYLT2Q9H1B5 865 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 FBRSL1Q9HCM7 1045 aaKnown RBP17.31■□□□□ 0.36
SNX1-213ENST00000561026 DUS2Q9NX74 493 aaKnown RBP17.31■□□□□ 0.36
SNX1-213ENST00000561026 SERTAD1Q9UHV2 236 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 OBSL1O75147 1896 aa17.31■□□□□ 0.36
SNX1-213ENST00000561026 TRIM66O15016 1216 aa17.3■□□□□ 0.36
SNX1-213ENST00000561026 KLRC4O43908 158 aa17.3■□□□□ 0.36
SNX1-213ENST00000561026 PTPN1P18031 435 aaKnown RBP17.3■□□□□ 0.36
SNX1-213ENST00000561026 ANXA13P27216 316 aa17.3■□□□□ 0.36
SNX1-213ENST00000561026 ATICP31939 592 aa17.3■□□□□ 0.36
SNX1-213ENST00000561026 GALK1P51570 392 aa17.3■□□□□ 0.36
SNX1-213ENST00000561026 USP46P62068 366 aa17.3■□□□□ 0.36
SNX1-213ENST00000561026 SRSF5Q13243 272 aaKnown RBP17.3■□□□□ 0.36
SNX1-213ENST00000561026 KCNB1Q14721 858 aa17.3■□□□□ 0.36
SNX1-213ENST00000561026 MDH1BQ5I0G3 518 aa17.3■□□□□ 0.36
SNX1-213ENST00000561026 PKN3Q6P5Z2 889 aa17.3■□□□□ 0.36
SNX1-213ENST00000561026 TTC16Q8NEE8 873 aa17.3■□□□□ 0.36
SNX1-213ENST00000561026 GOLGA5Q8TBA6 731 aa17.3■□□□□ 0.36
SNX1-213ENST00000561026 PAGE5Q96GU1 130 aa17.3■□□□□ 0.36
SNX1-213ENST00000561026 ECT2Q9H8V3 914 aa17.3■□□□□ 0.36
SNX1-213ENST00000561026 EHD2Q9NZN4 543 aa17.3■□□□□ 0.36
SNX1-213ENST00000561026 ARHGAP26Q9UNA1 814 aa17.3■□□□□ 0.36
SNX1-213ENST00000561026 ZNF638Q14966 1978 aaKnown RBP17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms