RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 SYN2Q92777 582 aaPredicted RBP13.99□□□□□ -0.17
TRAF3-208ENST00000560371 RIOX1Q9H6W3 641 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 SCUBE2Q9NQ36 999 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 TLR8Q9NR97 1041 aaKnown RBP13.99□□□□□ -0.17
TRAF3-208ENST00000560371 CNTRLQ7Z7A1 2325 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 CASZ1Q86V15 1759 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 FOXN3O00409 490 aaPredicted RBP13.99□□□□□ -0.17
TRAF3-208ENST00000560371 RHOBTB1O94844 696 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 FGFR2P21802 821 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 PGM5Q15124 567 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 TIGD7Q6NT04 549 aaPredicted RBP13.99□□□□□ -0.17
TRAF3-208ENST00000560371 TRIM65Q6PJ69 517 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 CDK5RAP1Q96SZ6 601 aaKnown RBP13.99□□□□□ -0.17
TRAF3-208ENST00000560371 KRT87PA6NCN2 255 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 USP27XA6NNY8 438 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 MAP3K13O43283 966 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 GHRP10912 638 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 PON1P27169 355 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 ERGIC2Q96RQ1 377 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 MRPL1Q9BYD6 325 aaKnown RBP13.99□□□□□ -0.17
TRAF3-208ENST00000560371 PPCSQ9HAB8 311 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 GIMAP4Q9NUV9 329 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 C6orf203Q9P0P8 240 aaPredicted RBP13.99□□□□□ -0.17
TRAF3-208ENST00000560371 TBKBP1A7MCY6 615 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 GYPCP04921 128 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 EPB42P16452 691 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 FAM83EQ2M2I3 478 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 ELOA2Q8IYF1 753 aaPredicted RBP13.99□□□□□ -0.17
TRAF3-208ENST00000560371 PDCD2LQ9BRP1 358 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 TRIM51Q9BSJ1 452 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 TRIM10Q9UDY6 481 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 AURKCQ9UQB9 309 aa13.99□□□□□ -0.17
TRAF3-208ENST00000560371 AAR2Q9Y312 384 aaKnown RBP13.99□□□□□ -0.17
TRAF3-208ENST00000560371 CLASP2O75122 1294 aaKnown RBP13.98□□□□□ -0.17
TRAF3-208ENST00000560371 HOXC6P09630 235 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 VCLP18206 1134 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 TGM2P21980 687 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 PTK7Q13308 1070 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 FSCN1Q16658 493 aaKnown RBP13.98□□□□□ -0.17
TRAF3-208ENST00000560371 PHKG1Q16816 387 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 PRUNE1Q86TP1 453 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 CDCA5Q96FF9 252 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 EMILIN2Q9BXX0 1053 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 TMEM131LA2VDJ0 1609 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 EFCAB14O75071 495 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 GRB10Q13322 594 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 PTGISQ16647 500 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 ZNF513Q8N8E2 541 aaPredicted RBP13.98□□□□□ -0.17
TRAF3-208ENST00000560371 ANKS1AQ92625 1134 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 NFKBIL1Q9UBC1 381 aaPredicted RBP13.98□□□□□ -0.17
TRAF3-208ENST00000560371 CHORDC1Q9UHD1 332 aaPredicted RBP13.98□□□□□ -0.17
TRAF3-208ENST00000560371 TRMT6Q9UJA5 497 aaKnown RBP13.98□□□□□ -0.17
TRAF3-208ENST00000560371 MYL4P12829 197 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 STIP1P31948 543 aaKnown RBP13.98□□□□□ -0.17
TRAF3-208ENST00000560371 OVOS1Q6IE37 1185 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 HERC6Q8IVU3 1022 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 VPS37AQ8NEZ2 397 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 FBXO44Q9H4M3 255 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 VPS28Q9UK41 221 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 SNRPAP09012 282 aaKnown RBP13.98□□□□□ -0.17
TRAF3-208ENST00000560371 HLA-DPA1P20036 260 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 KPNA1P52294 538 aaPredicted RBP13.98□□□□□ -0.17
TRAF3-208ENST00000560371 GIT2Q14161 759 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 MRNIPQ6NTE8 343 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 POP1Q99575 1024 aaKnown RBP13.98□□□□□ -0.17
TRAF3-208ENST00000560371 ETNK1Q9HBU6 452 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 MRGBPQ9NV56 204 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 STOML1Q9UBI4 398 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 NR2E3Q9Y5X4 410 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 ENDOD1O94919 500 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 HPCAP84074 193 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 HIST2H2ACQ16777 129 aaPredicted RBP13.98□□□□□ -0.17
TRAF3-208ENST00000560371 HIST2H2AA3Q6FI13 130 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 NUP93Q8N1F7 819 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 PCYOX1LQ8NBM8 494 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 SNTG2Q9NY99 539 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 CKBP12277 381 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 ZNF720Q7Z2F6 126 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 TMCO5AQ8N6Q1 288 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.98□□□□□ -0.17
TRAF3-208ENST00000560371 CISHQ9NSE2 258 aa13.98□□□□□ -0.17
TRAF3-208ENST00000560371 CHD4Q14839 1912 aa13.97□□□□□ -0.17
TRAF3-208ENST00000560371 SLIT1O75093 1534 aa13.97□□□□□ -0.17
TRAF3-208ENST00000560371 SLC12A8A0AV02 714 aa13.97□□□□□ -0.17
TRAF3-208ENST00000560371 RAB27AP51159 221 aa13.97□□□□□ -0.17
TRAF3-208ENST00000560371 OAZ1P54368 228 aa13.97□□□□□ -0.17
TRAF3-208ENST00000560371 ALDH18A1P54886 795 aaKnown RBP13.97□□□□□ -0.17
TRAF3-208ENST00000560371 MDH1BQ5I0G3 518 aa13.97□□□□□ -0.17
TRAF3-208ENST00000560371 RIN2Q8WYP3 895 aaPredicted RBP13.97□□□□□ -0.17
TRAF3-208ENST00000560371 ZC4H2Q9NQZ6 224 aa13.97□□□□□ -0.17
TRAF3-208ENST00000560371 POU4F1Q01851 419 aa13.97□□□□□ -0.17
TRAF3-208ENST00000560371 CUL3Q13618 768 aa13.97□□□□□ -0.17
TRAF3-208ENST00000560371 MFSD4BQ5TF39 518 aa13.97□□□□□ -0.17
TRAF3-208ENST00000560371 REPS2Q8NFH8 660 aa13.97□□□□□ -0.17
TRAF3-208ENST00000560371 P2RX7Q99572 595 aaKnown RBP13.97□□□□□ -0.17
TRAF3-208ENST00000560371 FRMD8Q9BZ67 464 aaPredicted RBP13.97□□□□□ -0.17
TRAF3-208ENST00000560371 NMRK2Q9NPI5 230 aa13.97□□□□□ -0.17
TRAF3-208ENST00000560371 THG1LQ9NWX6 298 aaKnown RBP13.97□□□□□ -0.17
TRAF3-208ENST00000560371 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.97□□□□□ -0.17
TRAF3-208ENST00000560371 BCL9O00512 1426 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms