RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 GSDMDP57764 484 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 KLHL30Q0D2K2 578 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 DUSP4Q13115 394 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 ADGRE1Q14246 886 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 PPP1R26Q5T8A7 1209 aaPredicted RBP9.78□□□□□ -0.84
LDLR-210ENST00000559340 ADGRD2Q7Z7M1 963 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 SCN4BQ8IWT1 228 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 MICALL1Q8N3F8 863 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 C12orf29Q8N999 325 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 ATAD1Q8NBU5 361 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 SLC2A14Q8TDB8 520 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 BAP1Q92560 729 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 C8orf48Q96LL4 319 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 ZNF512Q96ME7 567 aaPredicted RBP9.78□□□□□ -0.84
LDLR-210ENST00000559340 PGLYRP2Q96PD5 576 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 TWNKQ96RR1 684 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 PKMYT1Q99640 499 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 DUSP16Q9BY84 665 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 ZNF518BQ9C0D4 1074 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 MIS12Q9H081 205 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 DMAP1Q9NPF5 467 aaPredicted RBP9.78□□□□□ -0.84
LDLR-210ENST00000559340 MAN1C1Q9NR34 630 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 FAM49BQ9NUQ9 324 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 ZDHHC7Q9NXF8 308 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 HMGXB4Q9UGU5 601 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 AJAP1Q9UKB5 411 aaPredicted RBP9.78□□□□□ -0.84
LDLR-210ENST00000559340 PCDHGC3Q9UN70 934 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 NME7Q9Y5B8 376 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 PCDHGC5Q9Y5F6 944 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 HCFC2Q9Y5Z7 792 aa9.78□□□□□ -0.84
LDLR-210ENST00000559340 O00370 1275 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 HCRTO43612 131 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 RTN3O95197 1032 aaPredicted RBP9.77□□□□□ -0.85
LDLR-210ENST00000559340 FGF19O95750 216 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 GYPCP04921 128 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 SERPING1P05155 500 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 C8AP07357 584 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 POU2F2P09086 479 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 CSH1P0DML2 217 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 CSH2P0DML3 217 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 CCDC130P13994 396 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 NPR3P17342 541 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 CYP2F1P24903 491 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 BRD2P25440 801 aaKnown RBP9.77□□□□□ -0.85
LDLR-210ENST00000559340 PRKCIP41743 596 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 ACADSBP45954 432 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 CDR2Q01850 454 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 ARID5AQ03989 594 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 BST2Q10589 180 aaKnown RBP9.77□□□□□ -0.85
LDLR-210ENST00000559340 HYAL1Q12794 435 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 TBX2Q13207 712 aaPredicted RBP9.77□□□□□ -0.85
LDLR-210ENST00000559340 ORC1Q13415 861 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 ADAM15Q13444 863 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 PTPN21Q16825 1174 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 GOLGA7BQ2TAP0 167 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 CES5AQ6NT32 575 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 LLGL2Q6P1M3 1020 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 FAM35AQ86V20 835 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 SLC47A2Q86VL8 602 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 FUKQ8N0W3 1084 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 LEMD2Q8NC56 503 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 TMEM35BQ8NCS4 154 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 CMASQ8NFW8 434 aaPredicted RBP9.77□□□□□ -0.85
LDLR-210ENST00000559340 PABPC5Q96DU9 382 aaKnown RBP9.77□□□□□ -0.85
LDLR-210ENST00000559340 SPATA17Q96L03 361 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 HSFY1Q96LI6 401 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 SEPT5Q99719 369 aaPredicted RBP9.77□□□□□ -0.85
LDLR-210ENST00000559340 AGPAT1Q99943 283 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 GPR88Q9GZN0 384 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 LHX5Q9H2C1 402 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 SFXN1Q9H9B4 322 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 PIDD1Q9HB75 910 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 PNPLA8Q9NP80 782 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 CYLDQ9NQC7 956 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 TMLHEQ9NVH6 421 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 THEGQ9P2T0 379 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 UXTQ9UBK9 157 aaPredicted RBP9.77□□□□□ -0.85
LDLR-210ENST00000559340 TSPAN16Q9UKR8 245 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.77□□□□□ -0.85
LDLR-210ENST00000559340 SLC27A5Q9Y2P5 690 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 INSL5Q9Y5Q6 135 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 PATJQ8NI35 1801 aa9.77□□□□□ -0.85
LDLR-210ENST00000559340 MYO16Q9Y6X6 1858 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 ANAPC1Q9H1A4 1944 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 UNC80Q8N2C7 3258 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 M0QYV0 167 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 CLDN5O00501 218 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 XPO1O14980 1071 aaKnown RBP9.76□□□□□ -0.85
LDLR-210ENST00000559340 MFAP3LO75121 409 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 MICAL2O94851 1124 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 SEC24AO95486 1093 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 LSM8O95777 96 aaKnown RBP9.76□□□□□ -0.85
LDLR-210ENST00000559340 SPATA31D3P0C874 917 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 EPCAMP16422 314 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 PTPN2P17706 415 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 HNRNPH3P31942 346 aaKnown RBP9.76□□□□□ -0.85
LDLR-210ENST00000559340 SKIV2LQ15477 1246 aaKnown RBP9.76□□□□□ -0.85
LDLR-210ENST00000559340 TDRD12Q587J7 1177 aaKnown RBP9.76□□□□□ -0.85
LDLR-210ENST00000559340 ANKRD54Q6NXT1 300 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 EP400NLQ6ZTU2 488 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms