RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 TMEM119Q4V9L6 283 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 TRIM61Q5EBN2 209 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 TMEM92Q6UXU6 159 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 DTHD1Q6ZMT9 781 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 C11orf74Q86VG3 221 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 TTC30AQ86WT1 665 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 METTL23Q86XA0 190 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 CD302Q8IX05 232 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 THEM5Q8N1Q8 247 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 CCDC33Q8N5R6 958 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 FRMD1Q8N878 549 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 ARL14EPQ8N8R7 260 aaPredicted RBP8.8□□□□□ -1
CCDC88C-214ENST00000557507 OLIG1Q8TAK6 271 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 TRMT2BQ96GJ1 504 aaKnown RBP8.8□□□□□ -1
CCDC88C-214ENST00000557507 FNBP1Q96RU3 617 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 FIZ1Q96SL8 496 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 REEP2Q9BRK0 252 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 ANP32EQ9BTT0 268 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 IKZF4Q9H2S9 585 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 TMEM206Q9H813 350 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 FSCN3Q9NQT6 498 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.8□□□□□ -1
CCDC88C-214ENST00000557507 TMEM74BQ9NUR3 256 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 GCNT4Q9P109 453 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 LARSQ9P2J5 1176 aaKnown RBP8.8□□□□□ -1
CCDC88C-214ENST00000557507 EVLQ9UI08 416 aaPredicted RBP8.8□□□□□ -1
CCDC88C-214ENST00000557507 MMP17Q9ULZ9 603 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 DERAQ9Y315 318 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 MSRB2Q9Y3D2 182 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 C2CD2Q9Y426 696 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 KNTC1P50748 2209 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 CKAP5Q14008 2032 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 TRAV19A0A0A6YYK7 116 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 ANKRD63C9JTQ0 380 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 H0YCG3 227 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 LAD1O00515 517 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 HCRTO43612 131 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 USP17L7P0C7H9 530 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 ENGP17813 658 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 ACAT1P24752 427 aaKnown RBP8.79□□□□□ -1
CCDC88C-214ENST00000557507 CYP2F1P24903 491 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 P2RY2P41231 377 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 WNT7BP56706 349 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 FAM193AP78312 1265 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 SIM1P81133 766 aaPredicted RBP8.79□□□□□ -1
CCDC88C-214ENST00000557507 ZXDBP98169 803 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 ATP2C1P98194 919 aaPredicted RBP8.79□□□□□ -1
CCDC88C-214ENST00000557507 TSPY1Q01534 308 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 CRY1Q16526 586 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 SCARA3Q6AZY7 606 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 PIP4P1Q86T03 277 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 TMEFF1Q8IYR6 380 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 DCP1BQ8IZD4 617 aaKnown RBP8.79□□□□□ -1
CCDC88C-214ENST00000557507 PDCL2Q8N4E4 241 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 SH3RF2Q8TEC5 729 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 LEO1Q8WVC0 666 aaPredicted RBP8.79□□□□□ -1
CCDC88C-214ENST00000557507 EXOC4Q96A65 974 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 FAM84AQ96KN4 292 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 MYRFLQ96LU7 910 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 PKMYT1Q99640 499 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 LINC00597Q9H2U6 94 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 ASB7Q9H672 318 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 ZDHHC4Q9NPG8 344 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 DPP3Q9NY33 737 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 KCND2Q9NZV8 630 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 UXTQ9UBK9 157 aaPredicted RBP8.79□□□□□ -1
CCDC88C-214ENST00000557507 MBD1Q9UIS9 605 aaPredicted RBP8.79□□□□□ -1
CCDC88C-214ENST00000557507 KCNG1Q9UIX4 513 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 ODF2LQ9ULJ1 636 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 L1RE1Q9UN81 338 aa8.79□□□□□ -1
CCDC88C-214ENST00000557507 BPTFQ12830 3046 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 KPNA7A9QM74 516 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 SGK1O00141 431 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 TNFRSF10BO14763 440 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 SCAMP3O14828 347 aaKnown RBP8.78□□□□□ -1
CCDC88C-214ENST00000557507 CAPNS1P04632 268 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 CYP17A1P05093 508 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 TCF3P15923 654 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 ZNF131P52739 623 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 LMAN2Q12907 356 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 SEMA3BQ13214 749 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 NFE2Q16621 373 aaPredicted RBP8.78□□□□□ -1
CCDC88C-214ENST00000557507 MAP7D1Q3KQU3 841 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 SV2CQ496J9 727 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 INTS6LQ5JSJ4 861 aaKnown RBP8.78□□□□□ -1
CCDC88C-214ENST00000557507 CRELD2Q6UXH1 353 aaPredicted RBP8.78□□□□□ -1
CCDC88C-214ENST00000557507 OSTM1Q86WC4 334 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 GPBP1Q86WP2 473 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 C12orf40Q86WS4 652 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 PROSER1Q86XN7 944 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 MYCT1Q8N699 235 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 ALLCQ8N6M5 410 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 TXNDC5Q8NBS9 432 aaKnown RBP8.78□□□□□ -1
CCDC88C-214ENST00000557507 OR2I1PQ8NGU4 316 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 ZNF560Q96MR9 790 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 LLPHQ9BRT6 129 aaKnown RBP8.78□□□□□ -1
CCDC88C-214ENST00000557507 ABCB6Q9NP58 842 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 DDX43Q9NXZ2 648 aaKnown RBP8.78□□□□□ -1
CCDC88C-214ENST00000557507 CIZ1Q9ULV3 898 aaPredicted RBP8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms