RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 TMEM196Q5HYL7 178 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 SV2BQ7L1I2 683 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 PIP4P1Q86T03 277 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 TMC8Q8IU68 726 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 MED15Q96RN5 788 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 GPR88Q9GZN0 384 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 BLZF1Q9H2G9 400 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 SLITRK6Q9H5Y7 841 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 ASAH2Q9NR71 780 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 STK17AQ9UEE5 414 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 FBXL5Q9UKA1 691 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 OTOL1A6NHN0 477 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-230ENST00000557427 H0YCG3 227 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 K7ENM7 598 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 ABLIM1O14639 778 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 CLDN3O15551 220 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 RNF40O75150 1001 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 TOM1L1O75674 476 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 EGFP01133 1207 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 PROZP22891 400 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 NCKAP1LP55160 1127 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 SIM1P81133 766 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-230ENST00000557427 AMPD3Q01432 767 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 SOX4Q06945 474 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-230ENST00000557427 ARHGAP29Q52LW3 1261 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 PMS2CLQ68D20 193 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 ALKAL1Q6UXT8 129 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 LEMD2Q8NC56 503 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 HNRNPLLQ8WVV9 542 aaKnown RBP13.45□□□□□ -0.26
SHMT2-230ENST00000557427 CCDC47Q96A33 483 aaKnown RBP13.45□□□□□ -0.26
SHMT2-230ENST00000557427 C7orf25Q9BPX7 421 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 TOPORSQ9NS56 1045 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-230ENST00000557427 TBX20Q9UMR3 447 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 NAV2Q8IVL1 2488 aa13.45□□□□□ -0.26
SHMT2-230ENST00000557427 ASXL3Q9C0F0 2248 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 MYMKA6NI61 221 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 KLRC4O43908 158 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 ATG13O75143 517 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 RHOBTB3O94955 611 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 VNN2O95498 520 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 PRAMEF12O95522 483 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 LIG4P49917 911 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 TERF1P54274 439 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 LRMPQ12912 555 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 ZC2HC1CQ53FD0 456 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-230ENST00000557427 CDKAL1Q5VV42 579 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 TPGS2Q68CL5 300 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 NAIF1Q69YI7 327 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-230ENST00000557427 ZPBP2Q6X784 338 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 RNF19BQ6ZMZ0 732 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 TMC6Q7Z403 805 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 FILIP1Q7Z7B0 1213 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 VSTM4Q8IW00 320 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 ELMOD1Q8N336 334 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 ZMAT2Q96NC0 199 aaKnown RBP13.44□□□□□ -0.26
SHMT2-230ENST00000557427 HAPLN2Q9GZV7 340 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 TBC1D7Q9P0N9 293 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 RWDD2AQ9UIY3 292 aa13.44□□□□□ -0.26
SHMT2-230ENST00000557427 TRIP11Q15643 1979 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 TULP1O00294 542 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-230ENST00000557427 TRDMT1O14717 391 aaKnown RBP13.43□□□□□ -0.26
SHMT2-230ENST00000557427 TRAPPC3O43617 180 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 PRB1P04280 392 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 CDK11BP21127 795 aaKnown RBP13.43□□□□□ -0.26
SHMT2-230ENST00000557427 BCKDHBP21953 392 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 GBP1P32455 592 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 PPP1R2P41236 205 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 ZNF131P52739 623 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 CCZ1BP86790 482 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 CCZ1P86791 482 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-230ENST00000557427 SPAG1Q07617 926 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 SEMA3BQ13214 749 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 SLC10A6Q3KNW5 377 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 ITPRIPL2Q3MIP1 535 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 CNNM4Q6P4Q7 775 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 GAREM2Q75VX8 874 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 RAB44Q7Z6P3 723 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-230ENST00000557427 GLIS3Q8NEA6 775 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 DDX12PQ92771 950 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 EZH1Q92800 747 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-230ENST00000557427 C18orf25Q96B23 403 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-230ENST00000557427 LRIG1Q96JA1 1093 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 LRRC27Q9C0I9 530 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 CRISPLD1Q9H336 500 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 SLC32A1Q9H598 525 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 EBF1Q9UH73 591 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 AFF4Q9UHB7 1163 aaKnown RBP13.43□□□□□ -0.26
SHMT2-230ENST00000557427 THADAQ6YHU6 1953 aa13.43□□□□□ -0.26
SHMT2-230ENST00000557427 ANKRD63C9JTQ0 380 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 HNRNPDLO14979 420 aaKnown RBP13.42□□□□□ -0.26
SHMT2-230ENST00000557427 IDEP14735 1019 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 TNFSF9P41273 254 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 GTF2BQ00403 316 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 MCL1Q07820 350 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 GRSF1Q12849 480 aaKnown RBP eCLIP13.42□□□□□ -0.26
SHMT2-230ENST00000557427 PAK1Q13153 545 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 KMT5BQ4FZB7 885 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 CTXN3Q4LDR2 81 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 COBLL1Q53SF7 1204 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 XKR4Q5GH76 650 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms