RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	FNBP1L	Q5T0N5	605 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	LPCAT4	Q643R3	524 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	SNRNP48	Q6IEG0	339 aa	Known RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZNF677	Q86XU0	584 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	NDUFAF2	Q8N183	169 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	HAS1	Q92839	578 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	KAT5	Q92993	513 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	CLPTM1L	Q96KA5	538 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZNF184	Q99676	751 aa	Predicted RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	PALMD	Q9NP74	551 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	TBC1D23	Q9NUY8	699 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	KCND2	Q9NZV8	630 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLC17A7	Q9P2U7	560 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	STXBP5L	Q9Y2K9	1186 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	RNF103-CHMP3	A0A140T963	221 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	EML1	O00423	815 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	GYS1	P13807	737 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	SFN	P31947	248 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	NT5C2	P49902	561 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	CCNG2	Q16589	344 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	MAPK6	Q16659	721 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	POTEA	Q6S8J7	498 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	ADCK1	Q86TW2	530 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	IQCK	Q8N0W5	287 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	PRELID2	Q8N945	189 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	TLCD1	Q96CP7	247 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	OPTN	Q96CV9	577 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	DNAJC19	Q96DA6	116 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	INPP4A	Q96PE3	977 aa	Predicted RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLITRK1	Q96PX8	696 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	GCNA	Q96QF7	691 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	MECR	Q9BV79	373 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	RIOX1	Q9H6W3	641 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	KCNH7	Q9NS40	1196 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	KIF17	Q9P2E2	1029 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZNF229	Q9UJW7	825 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	LAMB4	A4D0S4	1761 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	PROSC	O94903	275 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	GCLC	P48506	637 aa	Predicted RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	CHN2	P52757	468 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZBTB17	Q13105	803 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	SURF1	Q15526	300 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	LRRC8B	Q6P9F7	803 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	TAS1R2	Q8TE23	839 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLC35C1	Q96A29	364 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	LENG1	Q96BZ8	264 aa	Predicted RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	L3MBTL3	Q96JM7	780 aa	Predicted RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	ANKRD27	Q96NW4	1050 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	MRPL4	Q9BYD3	311 aa	Known RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	MRPL1	Q9BYD6	325 aa	Known RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	RPAP3	Q9H6T3	665 aa	Predicted RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	PPCS	Q9HAB8	311 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	TMEM165	Q9HC07	324 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	SCHIP1	Q9P0W5	487 aa	Predicted RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	RUVBL2	Q9Y230	463 aa	Known RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	LRCH1	Q9Y2L9	728 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	CRYBG1	Q9Y4K1	1723 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	SYCE1L	A8MT33	242 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZNF189	O75820	626 aa	Predicted RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	ADRB2	P07550	413 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	SP100	P23497	879 aa	Predicted RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	SDC4	P31431	198 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PCYT1A	P49585	367 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	SERPINB9	P50453	376 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	BNIP1	Q12981	228 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	FITM2	Q8N6M3	262 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	LRRC57	Q8N9N7	239 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	SEMA4D	Q92854	862 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	THAP11	Q96EK4	314 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	TAAR1	Q96RJ0	339 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	KCNK16	Q96T55	309 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	FSD1L	Q9BXM9	530 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	COPS7B	Q9H9Q2	264 aa	Predicted RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	LRRC4C	Q9HCJ2	640 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PACSIN3	Q9UKS6	424 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	GPR75-ASB3	A0A0A6YYF3	556 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	SAC3D1	A6NKF1	404 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	KBTBD13	C9JR72	458 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	LYPLA1	O75608	230 aa	Predicted RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLITRK3	O94933	977 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	CLPTM1	O96005	669 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PRKCB	P05771	671 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	NPR1	P16066	1061 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PSMC3	P17980	439 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PAM	P19021	973 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	TFE3	P19532	575 aa	Predicted RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	MLH1	P40692	756 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	KPNA2	P52292	529 aa	Known RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	KRT76	Q01546	638 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PEX6	Q13608	980 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	TFDP2	Q14188	446 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PDK3	Q15120	406 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	SGSM1	Q2NKQ1	1148 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	KRT27	Q7Z3Y8	459 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	LRP10	Q7Z4F1	713 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	ALLC	Q8N6M5	410 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PPP2R3C	Q969Q6	453 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PCDHB18P	Q96TA0	734 aa		5.18	□□□□□ -1.58

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