RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 CCDC42Q96M95 316 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 PGLYRP2Q96PD5 576 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 SYT11Q9BT88 431 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 CSNK1G1Q9HCP0 422 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 ABI2Q9NYB9 513 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-221ENST00000555773 ARHGAP20Q9P2F6 1191 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 PCDHGC5Q9Y5F6 944 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 PRRG1O14668 218 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 TRIM66O15016 1216 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 NCK2O43639 380 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 NRDCO43847 1150 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 CSPG5O95196 566 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 VNN2O95498 520 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 CALCAP01258 141 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 CYP1A1P04798 512 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-221ENST00000555773 MMEP08473 750 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 CYP2F1P24903 491 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 CDH5P33151 784 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-221ENST00000555773 GRIK1P39086 918 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 GPD2P43304 727 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 SNX16P57768 344 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 FMO1Q01740 532 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 BST2Q10589 180 aaKnown RBP13.19□□□□□ -0.3
SHMT2-221ENST00000555773 CCDC142Q17RM4 750 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 TAF3Q5VWG9 929 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 KREMEN2Q8NCW0 462 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 CCDC112Q8NEF3 446 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 SLC30A5Q8TAD4 765 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 SLC20A1Q8WUM9 679 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 SLC35F5Q8WV83 523 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 HSFY1Q96LI6 401 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 NOX5Q96PH1 765 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 GAS2L1Q99501 681 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-221ENST00000555773 CHP1Q99653 195 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 BAG1Q99933 345 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-221ENST00000555773 CYP4F11Q9HBI6 524 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 PNPLA8Q9NP80 782 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 DMAP1Q9NPF5 467 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-221ENST00000555773 FBXW11Q9UKB1 542 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 SLC27A5Q9Y2P5 690 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 MTCH2Q9Y6C9 303 aa13.19□□□□□ -0.3
SHMT2-221ENST00000555773 CHD7Q9P2D1 2997 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 M0QYV0 167 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 XPO1O14980 1071 aaKnown RBP13.18□□□□□ -0.3
SHMT2-221ENST00000555773 PER2O15055 1255 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 SEC24AO95486 1093 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 PTMAP06454 111 aaKnown RBP13.18□□□□□ -0.3
SHMT2-221ENST00000555773 GZMAP12544 262 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 EIF4A3P38919 411 aaKnown RBP13.18□□□□□ -0.3
SHMT2-221ENST00000555773 ALDH1A3P47895 512 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 NRIP1P48552 1158 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 PDE4CQ08493 712 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 PLD1Q13393 1074 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 ASTE1Q2TB18 679 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-221ENST00000555773 MGAT5BQ3V5L5 792 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 LIN9Q5TKA1 542 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 DENND1BQ6P3S1 775 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 CLEC20AQ6ZU45 233 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 ADGRD2Q7Z7M1 963 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 RBM23Q86U06 439 aaKnown RBP13.18□□□□□ -0.3
SHMT2-221ENST00000555773 TTC30AQ86WT1 665 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 GPIHBP1Q8IV16 184 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 LRRC8AQ8IWT6 810 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 UBA3Q8TBC4 463 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 KCTD13Q8WZ19 329 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 SECISBP2LQ93073 1101 aaKnown RBP13.18□□□□□ -0.3
SHMT2-221ENST00000555773 SPATA17Q96L03 361 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 SMOQ99835 787 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.18□□□□□ -0.3
SHMT2-221ENST00000555773 MIS12Q9H081 205 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 DEF6Q9H4E7 631 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 NHEJ1Q9H9Q4 299 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-221ENST00000555773 CYLDQ9NQC7 956 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 KRT82Q9NSB4 513 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 COMMD8Q9NX08 183 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 ADAMTS1Q9UHI8 967 aa13.18□□□□□ -0.3
SHMT2-221ENST00000555773 MYO7AQ13402 2215 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 MYO9BQ13459 2157 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 F8VP50 259 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 DDX3XO00571 662 aaKnown RBP eCLIP13.17□□□□□ -0.31e-14■■□□□ 13.5
SHMT2-221ENST00000555773 AKR1B10O60218 316 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 PLEKP08567 350 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-221ENST00000555773 CFHP08603 1231 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 UNGP13051 313 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-221ENST00000555773 CYLC1P35663 651 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-221ENST00000555773 ACADSBP45954 432 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 PLA2G4AP47712 749 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 RPL34P49207 117 aaKnown RBP13.17□□□□□ -0.3
SHMT2-221ENST00000555773 EPHB3P54753 998 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 MAP3K7CLP57077 242 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 KCNC3Q14003 757 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 ADGRE1Q14246 886 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 SLC18A3Q16572 532 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 CLEC16AQ2KHT3 1053 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 TCEAL5Q5H9L2 206 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 ACAD10Q6JQN1 1059 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 TMEM184AQ6ZMB5 413 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 SCN4BQ8IWT1 228 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 WDTC1Q8N5D0 677 aa13.17□□□□□ -0.3
SHMT2-221ENST00000555773 EFHBQ8N7U6 833 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms