RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 PUM1Q14671 1186 aaKnown RBP eCLIP13.63□□□□□ -0.23
LINC00643-202ENST00000553426 KCNB1Q14721 858 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 PSMD6Q15008 389 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 KNOP1Q1ED39 458 aaKnown RBP13.63□□□□□ -0.23
LINC00643-202ENST00000553426 WDR72Q3MJ13 1102 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 RESP18Q5W5W9 173 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 PRR23BQ6ZRT6 265 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 CPA6Q8N4T0 437 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 STKLD1Q8NE28 680 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 TTC16Q8NEE8 873 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 OR6B3Q8NGW1 331 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 MYCBPAPQ8TBZ2 947 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 MYLPFQ96A32 169 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 PKMYT1Q99640 499 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 CGRRF1Q99675 332 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 EBF3Q9H4W6 596 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 CCL26Q9Y258 94 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 PTPRJQ12913 1337 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 TRIM66O15016 1216 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 ATP2C2O75185 946 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 TACC1O75410 805 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 BDNFP23560 247 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 LMO2P25791 158 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 AP3M2P53677 418 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 LMNB2Q03252 620 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 NR1H3Q13133 447 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 CUL4BQ13620 913 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 SIM2Q14190 667 aaPredicted RBP13.62□□□□□ -0.23
LINC00643-202ENST00000553426 GAS6Q14393 721 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 MTF1Q14872 753 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 BMT2Q1RMZ1 405 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 SCARA3Q6AZY7 606 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 LAIR1Q6GTX8 287 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 DENND5BQ6ZUT9 1274 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 DGLUCYQ7Z3D6 616 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 LIMS2Q7Z4I7 341 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 LONP2Q86WA8 852 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 KBTBD7Q8WVZ9 684 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 SYAP1Q96A49 352 aaPredicted RBP13.62□□□□□ -0.23
LINC00643-202ENST00000553426 SPATA17Q96L03 361 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 EXOC1Q9NV70 894 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 DUS2Q9NX74 493 aaKnown RBP13.62□□□□□ -0.23
LINC00643-202ENST00000553426 TRPM5Q9NZQ8 1165 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 USP18Q9UMW8 372 aa13.62□□□□□ -0.23
LINC00643-202ENST00000553426 PRR5-ARHGAP8B1AHC4 643 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 TRDMT1O14717 391 aaKnown RBP13.61□□□□□ -0.23
LINC00643-202ENST00000553426 HCRTO43612 131 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 KRT37O76014 449 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 SLFN14P0C7P3 912 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 PFKLP17858 780 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 HDCP19113 662 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 DRD1P21728 446 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 CASP1P29466 404 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 ATICP31939 592 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 PPP3CCP48454 512 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 IFNAR2P48551 515 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 ARHGAP8P85298 464 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 DNM1Q05193 864 aaKnown RBP13.61□□□□□ -0.23
LINC00643-202ENST00000553426 EHHADHQ08426 723 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 PSMD2Q13200 908 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 BIRC3Q13489 604 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 TMEM196Q5HYL7 178 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 HEATR6Q6AI08 1181 aaKnown RBP13.61□□□□□ -0.23
LINC00643-202ENST00000553426 TRIM68Q6AZZ1 485 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 Q6ZS52 159 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 C12orf56Q8IXR9 622 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 SPRYD3Q8NCJ5 442 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 CCDC26Q8TAB7 109 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 OSCP1Q8WVF1 389 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 ATP2A3Q93084 1043 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 PCED1BQ96HM7 432 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 CRTAC1Q9NQ79 661 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 HPS4Q9NQG7 708 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 RCOR1Q9UKL0 485 aa13.61□□□□□ -0.23
LINC00643-202ENST00000553426 GPR179Q6PRD1 2367 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 CHURC1-FNTBB4DL54 471 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 TADA3O75528 432 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 KIF20AO95235 890 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 STAU1O95793 577 aaKnown RBP13.6□□□□□ -0.23
LINC00643-202ENST00000553426 CST3P01034 146 aaPredicted RBP13.6□□□□□ -0.23
LINC00643-202ENST00000553426 PTPN1P18031 435 aaKnown RBP13.6□□□□□ -0.23
LINC00643-202ENST00000553426 FNTBP49356 437 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 LPAL2Q16609 132 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 CCDC142Q17RM4 750 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 FBXO43Q4G163 708 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 MDH1BQ5I0G3 518 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 CEP68Q76N32 757 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.6□□□□□ -0.23
LINC00643-202ENST00000553426 ARL14EPQ8N8R7 260 aaPredicted RBP13.6□□□□□ -0.23
LINC00643-202ENST00000553426 CCDC47Q96A33 483 aaKnown RBP13.6□□□□□ -0.23
LINC00643-202ENST00000553426 SLITRK1Q96PX8 696 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 CYP2S1Q96SQ9 504 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 P2RY13Q9BPV8 354 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 MRPL45Q9BRJ2 306 aaKnown RBP13.6□□□□□ -0.23
LINC00643-202ENST00000553426 ELOVL4Q9GZR5 314 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 NXF1Q9UBU9 619 aaKnown RBP13.6□□□□□ -0.23
LINC00643-202ENST00000553426 USP25Q9UHP3 1055 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 SERTAD1Q9UHV2 236 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 SLC8A2Q9UPR5 921 aa13.6□□□□□ -0.23
LINC00643-202ENST00000553426 ATP8B3O60423 1300 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms