RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ARHGAP28Q9P2N2 729 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ANKFY1Q9P2R3 1169 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 GABBR1Q9UBS5 961 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 TRPC5Q9UL62 973 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SHOC2Q9UQ13 582 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 DRG1Q9Y295 367 aaKnown RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SNCAIPQ9Y6H5 919 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 COL2A1P02458 1487 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 TESPA1A2RU30 521 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 LRRD1A4D1F6 860 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 NVLO15381 856 aaKnown RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 EXTL3O43909 919 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ZWINTO95229 277 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 CST3P01034 146 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ITGAVP06756 1048 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 MMP10P09238 476 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 CD48P09326 243 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 DLDP09622 509 aaKnown RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 IL1R2P27930 398 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 RPL22P35268 128 aaKnown RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ETV4P43268 484 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ERFP50548 548 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 MRPS35P82673 323 aaKnown RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 OTUD4Q01804 1114 aaKnown RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 PLCB3Q01970 1234 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SP4Q02446 784 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 GHRHRQ02643 423 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SMTNL2Q2TAL5 461 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 GNPTABQ3T906 1256 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ZC3H12AQ5D1E8 599 aaKnown RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 KCNT1Q5JUK3 1230 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SYCP2LQ5T4T6 812 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 CYP4A22Q5TCH4 519 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 RNF220Q5VTB9 566 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 OR52E8Q6IFG1 317 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 RFX8Q6ZV50 586 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 RHPN2Q8IUC4 686 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 LMNTD2Q8IXW0 634 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 FBXO36Q8NEA4 188 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SHKBP1Q8TBC3 707 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ACTL9Q8TC94 416 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 PYROXD1Q8WU10 500 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SCG3Q8WXD2 468 aaKnown RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SKA1Q96BD8 255 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 IFT43Q96FT9 208 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 RBM41Q96IZ5 413 aaKnown RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 WNK4Q96J92 1243 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 GJD4Q96KN9 370 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 FNBP1Q96RU3 617 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 PDCD2LQ9BRP1 358 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 BTBD10Q9BSF8 475 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 TMEM120AQ9BXJ8 343 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ACSS3Q9H6R3 686 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 MANSC1Q9H8J5 431 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 QTRT2Q9H974 415 aaKnown RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SSU72Q9NP77 194 aaKnown RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SPATS2LQ9NUQ6 558 aaKnown RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 PARVAQ9NVD7 372 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 DLGAP2Q9P1A6 1054 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ARMCX1Q9P291 453 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ZNF70Q9UC06 446 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 IP6K2Q9UHH9 426 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 CNTN6Q9UQ52 1028 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 WASF2Q9Y6W5 498 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SMAPO00193 183 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 NDC80O14777 642 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 CAPN9O14815 690 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 ATP2A1O14983 1001 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 HAUS5O94927 633 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 DHRS4L1P0CG22 281 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 BGNP21810 368 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 AMPD1P23109 780 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 BRD2P25440 801 aaKnown RBP5.68□□□□□ -1.5
LIMA1-212ENST00000552491 CPA2P48052 419 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 JAK3P52333 1124 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 ZNF132P52740 706 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 KLC1Q07866 573 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 MUM1Q2TAK8 710 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 ZNF394Q53GI3 561 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 TFDP3Q5H9I0 405 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 PPP1R15BQ5SWA1 713 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 FYB2Q5VWT5 728 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 ZNF787Q6DD87 383 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 SWSAP1Q6NVH7 229 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 TRIM72Q6ZMU5 477 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 CDHR3Q6ZTQ4 885 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 ALYREFQ86V81 257 aaKnown RBP5.68□□□□□ -1.5
LIMA1-212ENST00000552491 APLFQ8IW19 511 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-212ENST00000552491 CCDC60Q8IWA6 550 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-212ENST00000552491 UNC45BQ8IWX7 931 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 SEPT12Q8IYM1 358 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 UBR7Q8N806 425 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 FAM151AQ8WW52 585 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 ZNF775Q96BV0 537 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-212ENST00000552491 RMDN3Q96TC7 470 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 TUBB6Q9BUF5 446 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 ZNF341Q9BYN7 854 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 POLR3FQ9H1D9 316 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-212ENST00000552491 ZNF395Q9H8N7 513 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-212ENST00000552491 PXMP2Q9NR77 195 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms