RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 CDC5LQ99459 802 aaKnown RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 SENP7Q9BQF6 1050 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 PAGR1Q9BTK6 254 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 MYLK2Q9H1R3 596 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 ZNF287Q9HBT7 754 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 ZCCHC17Q9NP64 241 aaKnown RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 NGRNQ9NPE2 291 aaKnown RBP4.39□□□□□ -1.71
LIMA1-208ENST00000551691 TDP1Q9NUW8 608 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 PRSS50Q9UI38 385 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 SLC4A7Q9Y6M7 1214 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 DGKBQ9Y6T7 804 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 OTOFQ9HC10 1997 aa4.39□□□□□ -1.71
LIMA1-208ENST00000551691 PSME4Q14997 1843 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 TCRBV5S2A0A599 114 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 PIP5K1CO60331 668 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 TADA3O75528 432 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 HMGCRP04035 888 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 BRAFP15056 766 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 FAHP16930 419 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 CAPN2P17655 700 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 ABCB4P21439 1286 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 SMARCA1P28370 1054 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 GRK6P43250 576 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 SARSP49591 514 aaKnown RBP4.38□□□□□ -1.71
LIMA1-208ENST00000551691 PRIM2P49643 509 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 GPR15P49685 360 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 PER3P56645 1201 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 ADAM17P78536 824 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 CACNB2Q08289 660 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-208ENST00000551691 TRIM25Q14258 630 aaKnown RBP4.38□□□□□ -1.71
LIMA1-208ENST00000551691 ADRM1Q16186 407 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 CCL14Q16627 93 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 C3orf36Q3SXR2 165 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 CCDC38Q502W7 563 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 CCDC178Q5BJE1 867 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 VASNQ6EMK4 673 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 KRTAP5-3Q6L8H2 238 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 PGBD2Q6P3X8 592 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 CCDC174Q6PII3 467 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 BTNL9Q6UXG8 535 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 GADL1Q6ZQY3 521 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 CCDC129Q6ZRS4 1044 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 RTN4RL1Q86UN2 441 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-208ENST00000551691 ZNF761Q86XN6 746 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-208ENST00000551691 LIX1LQ8IVB5 337 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 KRT78Q8N1N4 520 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 PRR18Q8N4B5 295 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 FAM26EQ8N5C1 309 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 SH2D3CQ8N5H7 860 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 GLB1L3Q8NCI6 653 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-208ENST00000551691 PRSS33Q8NF86 280 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 TTLL11Q8NHH1 800 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 TSPEARQ8WU66 669 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 CLEC4DQ8WXI8 215 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 KAT5Q92993 513 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 LOXL4Q96JB6 756 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 C8orf49Q96NF6 230 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 COA1Q9GZY4 146 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 GREM2Q9H772 168 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 AS3MTQ9HBK9 375 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 SARS2Q9NP81 518 aaKnown RBP4.38□□□□□ -1.71
LIMA1-208ENST00000551691 DMRT3Q9NQL9 472 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 INCENPQ9NQS7 918 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 STARD7Q9NQZ5 370 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 SMPD4Q9NXE4 827 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 GPRC5BQ9NZH0 403 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 FTSJ1Q9UET6 329 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 SWAP70Q9UH65 585 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 FEZ2Q9UHY8 353 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-208ENST00000551691 CDC23Q9UJX2 597 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 FBXO9Q9UK97 447 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-208ENST00000551691 PADI4Q9UM07 663 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 LIMCH1Q9UPQ0 1083 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 TELO2Q9Y4R8 837 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 CHD6Q8TD26 2715 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 XDHP47989 1333 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 VPS13AQ96RL7 3174 aa4.38□□□□□ -1.71
LIMA1-208ENST00000551691 TRANK1O15050 2925 aa4.37□□□□□ -1.71
LIMA1-208ENST00000551691 SETXQ7Z333 2677 aaKnown RBP4.37□□□□□ -1.71
LIMA1-208ENST00000551691 MED19A0JLT2 244 aaPredicted RBP4.37□□□□□ -1.71
LIMA1-208ENST00000551691 POM121BA6NF01 834 aa4.37□□□□□ -1.71
LIMA1-208ENST00000551691 PHGDHO43175 533 aaKnown RBP4.37□□□□□ -1.71
LIMA1-208ENST00000551691 AKAP8O43823 692 aaKnown RBP4.37□□□□□ -1.71
LIMA1-208ENST00000551691 ARIH2O95376 493 aa4.37□□□□□ -1.71
LIMA1-208ENST00000551691 C8BP07358 591 aa4.37□□□□□ -1.71
LIMA1-208ENST00000551691 PFKMP08237 780 aa4.37□□□□□ -1.71
LIMA1-208ENST00000551691 MYOGP15173 224 aa4.37□□□□□ -1.71
LIMA1-208ENST00000551691 TNFRSF1AP19438 455 aa4.37□□□□□ -1.71
LIMA1-208ENST00000551691 APEX1P27695 318 aaKnown RBP4.37□□□□□ -1.71
LIMA1-208ENST00000551691 PRKAR2BP31323 418 aa4.37□□□□□ -1.71
LIMA1-208ENST00000551691 MC4RP32245 332 aa4.37□□□□□ -1.71
LIMA1-208ENST00000551691 PPM1AP35813 382 aa4.37□□□□□ -1.71
LIMA1-208ENST00000551691 STT3AP46977 705 aa4.37□□□□□ -1.71
LIMA1-208ENST00000551691 CCT4P50991 539 aaKnown RBP4.37□□□□□ -1.71
LIMA1-208ENST00000551691 RAB1AP62820 205 aa4.37□□□□□ -1.71
LIMA1-208ENST00000551691 ZXDAP98168 799 aa4.37□□□□□ -1.71
LIMA1-208ENST00000551691 PPATQ06203 517 aa4.37□□□□□ -1.71
LIMA1-208ENST00000551691 DBPQ10586 325 aaPredicted RBP4.37□□□□□ -1.71
LIMA1-208ENST00000551691 BLMHQ13867 455 aa4.37□□□□□ -1.71
LIMA1-208ENST00000551691 FGL2Q14314 439 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms