RNA–Protein interactions for RNA: ENST00000551008.5

NPAS3-209, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 1 (best) BASIC

Gene NPAS3, Length 1,002 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-209ENST00000551008 PAQR9Q6ZVX9 377 aa13.92□□□□□ -0.18
NPAS3-209ENST00000551008 GUF1Q8N442 669 aaKnown RBP13.92□□□□□ -0.18
NPAS3-209ENST00000551008 MAB21L3Q8N8X9 362 aa13.92□□□□□ -0.18
NPAS3-209ENST00000551008 MYCBPAPQ8TBZ2 947 aa13.92□□□□□ -0.18
NPAS3-209ENST00000551008 TMC2Q8TDI7 906 aa13.92□□□□□ -0.18
NPAS3-209ENST00000551008 E2F7Q96AV8 911 aa13.92□□□□□ -0.18
NPAS3-209ENST00000551008 HPS4Q9NQG7 708 aa13.92□□□□□ -0.18
NPAS3-209ENST00000551008 GTSE1Q9NYZ3 720 aa13.92□□□□□ -0.18
NPAS3-209ENST00000551008 GCNT4Q9P109 453 aa13.92□□□□□ -0.18
NPAS3-209ENST00000551008 NXF1Q9UBU9 619 aaKnown RBP13.92□□□□□ -0.18
NPAS3-209ENST00000551008 NDRG2Q9UN36 371 aaKnown RBP13.92□□□□□ -0.18
NPAS3-209ENST00000551008 MAGED2Q9UNF1 606 aaPredicted RBP13.92□□□□□ -0.18
NPAS3-209ENST00000551008 ATP6V1DQ9Y5K8 247 aa13.92□□□□□ -0.18
NPAS3-209ENST00000551008 R4GN57 208 aa13.92□□□□□ -0.18
NPAS3-209ENST00000551008 EML5Q05BV3 1969 aa13.92□□□□□ -0.18
NPAS3-209ENST00000551008 CLDN5O00501 218 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 FAM163BP0C2L3 166 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 TDGF1P13385 188 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 ATICP31939 592 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 GNL1P36915 607 aaPredicted RBP13.91□□□□□ -0.18
NPAS3-209ENST00000551008 RPS9P46781 194 aaKnown RBP13.91□□□□□ -0.18
NPAS3-209ENST00000551008 PPP3CAQ08209 521 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 NCOA4Q13772 614 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 SPOPLQ6IQ16 392 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 ZNF852Q6ZMS4 543 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 SV2AQ7L0J3 742 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 MON1AQ86VX9 555 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 SCN4BQ8IWT1 228 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 BPIFB1Q8TDL5 484 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 SPATA17Q96L03 361 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 TTLL2Q9BWV7 592 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 B3GNT5Q9BYG0 378 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 ZNF518BQ9C0D4 1074 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 CHRDQ9H2X0 955 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 HMGXB4Q9UGU5 601 aa13.91□□□□□ -0.18
NPAS3-209ENST00000551008 C2orf78A6NCI8 922 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 MAPK13O15264 365 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 ASS1P00966 412 aaKnown RBP13.9□□□□□ -0.18
NPAS3-209ENST00000551008 TRIM49P0CI25 452 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 TRIM49CP0CI26 452 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 CHRNB1P11230 501 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 PTPN1P18031 435 aaKnown RBP13.9□□□□□ -0.18
NPAS3-209ENST00000551008 CCNE1P24864 410 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 CTHP32929 405 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 MLLT6P55198 1093 aaPredicted RBP13.9□□□□□ -0.18
NPAS3-209ENST00000551008 TNNC1P63316 161 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 ZXDBP98169 803 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 MTAPQ13126 283 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 BIRC3Q13489 604 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 ZNF699Q32M78 642 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 ARHGAP29Q52LW3 1261 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 CEP135Q66GS9 1140 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 VSTM1Q6UX27 236 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 SCARA5Q6ZMJ2 495 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 C4orf50Q6ZRC1 276 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 B3GALNT2Q8NCR0 500 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 OR6B3Q8NGW1 331 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 TTC8Q8TAM2 541 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 SPATA20Q8TB22 786 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 FAM3CQ92520 227 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 NELL1Q92832 810 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 ERCC4Q92889 916 aaPredicted RBP13.9□□□□□ -0.18
NPAS3-209ENST00000551008 SYAP1Q96A49 352 aaPredicted RBP13.9□□□□□ -0.18
NPAS3-209ENST00000551008 GCNAQ96QF7 691 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 FAM83CQ9BQN1 747 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 BCO2Q9BYV7 579 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 APOBEC3GQ9HC16 384 aaKnown RBP13.9□□□□□ -0.18
NPAS3-209ENST00000551008 PRMT8Q9NR22 394 aaPredicted RBP13.9□□□□□ -0.18
NPAS3-209ENST00000551008 MAGEC2Q9UBF1 373 aaPredicted RBP13.9□□□□□ -0.18
NPAS3-209ENST00000551008 DCHS1Q96JQ0 3298 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 DMXL1Q9Y485 3027 aa13.9□□□□□ -0.18
NPAS3-209ENST00000551008 F8VP50 259 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 SPECC1L-ADORA2AF8WAN1 911 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 HLA-DRAP01903 254 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 ARSAP15289 507 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 NR2F2P24468 414 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 DDX6P26196 483 aaKnown RBP eCLIP13.89□□□□□ -0.19
NPAS3-209ENST00000551008 HOXC13P31276 330 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 ASPAP45381 313 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 AP3M2P53677 418 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 CYP27A1Q02318 531 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 USP4Q13107 963 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 TRPC3Q13507 836 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 BECN1Q14457 450 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 ZNF77Q15935 545 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 TAF12Q16514 161 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 ZNF667Q5HYK9 610 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 NAIF1Q69YI7 327 aaPredicted RBP13.89□□□□□ -0.19
NPAS3-209ENST00000551008 TRIM68Q6AZZ1 485 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 CELF5Q8N6W0 485 aaKnown RBP13.89□□□□□ -0.19
NPAS3-209ENST00000551008 MRPS31Q92665 395 aaKnown RBP13.89□□□□□ -0.19
NPAS3-209ENST00000551008 EEF2KMTQ96G04 330 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 CYP2S1Q96SQ9 504 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 NELL2Q99435 816 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 SNX25Q9H3E2 840 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 GKN1Q9NS71 199 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 RBM12Q9NTZ6 932 aaKnown RBP13.89□□□□□ -0.19
NPAS3-209ENST00000551008 TDP1Q9NUW8 608 aa13.89□□□□□ -0.19
NPAS3-209ENST00000551008 SPATA6Q9NWH7 488 aaPredicted RBP13.89□□□□□ -0.19
NPAS3-209ENST00000551008 C2orf42Q9NWW7 574 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms