RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CCNHP51946 323 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 CTBSQ01459 385 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 KRT17Q04695 432 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 C2orf27AQ580R0 203 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 GALNT17Q6IS24 598 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 RCSD1Q6JBY9 416 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 ZBED8Q8IZ13 594 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 RAD54LQ92698 747 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 ELMO3Q96BJ8 720 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 ERGIC2Q96RQ1 377 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 RIOK1Q9BRS2 568 aaKnown RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 FGFBP2Q9BYJ0 223 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 EHMT1Q9H9B1 1298 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 SMYD2Q9NRG4 433 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 RGL1Q9NZL6 768 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 CNOT8Q9UFF9 292 aaKnown RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 ANAPC4Q9UJX5 808 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 C15orf41Q9Y2V0 281 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 ALG6Q9Y672 507 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 FOXO6A8MYZ6 492 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 NOL3O60936 208 aaKnown RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 ENO1P06733 434 aaKnown RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 ACRP10323 421 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 ATP6V1B1P15313 513 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 NMT1P30419 496 aaKnown RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 PGM1P36871 562 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 FLT3P36888 993 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 FKBP1BP68106 108 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 RNASELQ05823 741 aaKnown RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 PCDH1Q08174 1060 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 INPP5AQ14642 412 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 RCN1Q15293 331 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 SH3RF3Q8TEJ3 882 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 POMGNT1Q8WZA1 660 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 TEKT1Q969V4 418 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 GTPBP3Q969Y2 492 aaKnown RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 CFAP57Q96MR6 1250 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 THTPAQ9BU02 230 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 CALN1Q9BXU9 219 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 CCSER1Q9C0I3 900 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 LOC100653049A0A140TA62 436 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 PVALEFA0A1B0GWK0 134 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 A8MUI8 341 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 H7C0C1 242 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 RBAK-RBAKDNI3L0D1 243 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 CAPN9O14815 690 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 TRAPPC3O43617 180 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 MAN1A2O60476 641 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 KRT34O76011 436 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 B3GALT4O96024 378 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 CD58P19256 250 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 PHBP35232 272 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 ATP5OP48047 213 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 MXI1P50539 228 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 PAPOLAP51003 745 aaKnown RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 ARFIP2P53365 341 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 CACNB3P54284 484 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 PCBP4P57723 403 aaKnown RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 ANKRD20A2Q5SQ80 823 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 NOL9Q5SY16 702 aaKnown RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 ANKRD20A1Q5TYW2 823 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 AADACL2Q6P093 401 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 TXNDC11Q6PKC3 985 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 SLC30A10Q6XR72 485 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 C16orf86Q6ZW13 317 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 PDZD3Q86UT5 571 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 FAM83AQ86UY5 434 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 RASSF3Q86WH2 238 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 ST13P4Q8IZP2 240 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 CXorf38Q8TB03 319 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 RFFLQ8WZ73 363 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 PPP1R36Q96LQ0 422 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 DDX50Q9BQ39 737 aaKnown RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 NUP85Q9BW27 656 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 SPZ1Q9BXG8 430 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 PABPC3Q9H361 631 aaKnown RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 BCAS3Q9H6U6 928 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 ATP6V0A4Q9HBG4 840 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 USP40Q9NVE5 1235 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 FAM86C1Q9NVL1 165 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 ZMYM5Q9UJ78 669 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 LZTS1Q9Y250 596 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 GPR75-ASB3A0A0A6YYF3 556 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 DKC1O60832 514 aaKnown RBP eCLIP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 CBX6O95503 412 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 AGTP01019 485 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 ZBTB48P10074 688 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 POU3F3P20264 500 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 PIK3CAP42336 1068 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 FNTAP49354 379 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 PDE1BQ01064 536 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 GPS1Q13098 491 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 LAMB3Q13751 1172 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 ALX1Q15699 326 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 KNOP1Q1ED39 458 aaKnown RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 ZC2HC1CQ53FD0 456 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 XKR9Q5GH70 373 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 LGSNQ5TDP6 509 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 AGBL2Q5U5Z8 902 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 LLGL2Q6P1M3 1020 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms