RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 LRIG3Q6UXM1 1119 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 ZNF467Q7Z7K2 595 aaPredicted RBP11.67□□□□□ -0.54
CUX1-212ENST00000547394 RASAL3Q86YV0 1011 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 EIF1ADQ8N9N8 165 aaKnown RBP11.67□□□□□ -0.54
CUX1-212ENST00000547394 SNF8Q96H20 258 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 SLC15A5A6NIM6 579 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 NDUFAB1O14561 156 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 LIASO43766 372 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 ATP2C2O75185 946 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 GABBR2O75899 941 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 FGFR1P11362 822 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 DARSP14868 501 aaKnown RBP11.66□□□□□ -0.54
CUX1-212ENST00000547394 PSEN2P49810 448 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 SNX17Q15036 470 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 FAM47CQ5HY64 1035 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 SLC27A1Q6PCB7 646 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 ACTL9Q8TC94 416 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 WNT8BQ93098 351 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 NT5C1AQ9BXI3 368 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 NGRNQ9NPE2 291 aaKnown RBP11.66□□□□□ -0.54
CUX1-212ENST00000547394 SLC45A1Q9Y2W3 748 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 SIGLEC16A6NMB1 481 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 TNPO2O14787 897 aaKnown RBP11.66□□□□□ -0.54
CUX1-212ENST00000547394 MED7O43513 233 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 CDH5P33151 784 aaPredicted RBP11.66□□□□□ -0.54
CUX1-212ENST00000547394 MDH1P40925 334 aaKnown RBP11.66□□□□□ -0.54
CUX1-212ENST00000547394 GRM5P41594 1212 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 IFNAR2P48551 515 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 DRG2P55039 364 aaKnown RBP11.66□□□□□ -0.54
CUX1-212ENST00000547394 OTUD4Q01804 1114 aaKnown RBP11.66□□□□□ -0.54
CUX1-212ENST00000547394 PTK6Q13882 451 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 LRRC14Q15048 493 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 CLUL1Q15846 466 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 ZC3H18Q86VM9 953 aaKnown RBP11.66□□□□□ -0.54
CUX1-212ENST00000547394 IFNLR1Q8IU57 520 aaPredicted RBP11.66□□□□□ -0.54
CUX1-212ENST00000547394 RCOR2Q8IZ40 523 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 KCTD6Q8NC69 237 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 RXFP2Q8WXD0 754 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.66□□□□□ -0.543e-7■■■■■ 94
CUX1-212ENST00000547394 LPPQ93052 612 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 SNX27Q96L92 541 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 TIMM13Q9Y5L4 95 aaPredicted RBP11.66□□□□□ -0.54
CUX1-212ENST00000547394 NR2E3Q9Y5X4 410 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 SCN4AP35499 1836 aa11.66□□□□□ -0.54
CUX1-212ENST00000547394 SYNJ2BP-COX16A0A087WUM0 186 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 C3orf70A6NLC5 250 aaPredicted RBP11.65□□□□□ -0.54
CUX1-212ENST00000547394 A8MXQ7 604 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 F5H423 210 aaPredicted RBP11.65□□□□□ -0.54
CUX1-212ENST00000547394 PDGFRAP16234 1089 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 CRHR2Q13324 411 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 PIGHQ14442 188 aaPredicted RBP11.65□□□□□ -0.54
CUX1-212ENST00000547394 CCNG2Q16589 344 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 SOWAHAQ2M3V2 549 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 ZC3H12AQ5D1E8 599 aaKnown RBP11.65□□□□□ -0.54
CUX1-212ENST00000547394 TFDP3Q5H9I0 405 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 CTU1Q7Z7A3 348 aaKnown RBP11.65□□□□□ -0.54
CUX1-212ENST00000547394 RFX6Q8HWS3 928 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 RNF169Q8NCN4 708 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.65□□□□□ -0.543e-6■□□□□ 8.8
CUX1-212ENST00000547394 COX16Q9P0S2 106 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 ITGA11Q9UKX5 1188 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 SMIM28A0A1B0GU29 152 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 CLDN5O00501 218 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 RGS16O15492 202 aaPredicted RBP11.65□□□□□ -0.54
CUX1-212ENST00000547394 PAEPP09466 180 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 RARBP10826 455 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 LCP1P13796 627 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 SKOR1P84550 965 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 CAP1Q01518 475 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 TWF2Q6IBS0 349 aaKnown RBP11.65□□□□□ -0.54
CUX1-212ENST00000547394 NOTUMQ6P988 496 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 C1orf228Q6PIY5 440 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 ANKMY2Q8IV38 441 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 TRPV1Q8NER1 839 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 ZNF518BQ9C0D4 1074 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 NEU2Q9Y3R4 380 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 C2CD2Q9Y426 696 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 NRCAMQ92823 1304 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 COL1A2P08123 1366 aa11.65□□□□□ -0.54
CUX1-212ENST00000547394 TJP3O95049 919 aa11.65□□□□□ -0.55
CUX1-212ENST00000547394 RARGP13631 454 aa11.65□□□□□ -0.55
CUX1-212ENST00000547394 P4HA1P13674 534 aa11.65□□□□□ -0.55
CUX1-212ENST00000547394 PPP2R2AP63151 447 aa11.65□□□□□ -0.55
CUX1-212ENST00000547394 POU5F1BQ06416 359 aa11.65□□□□□ -0.55
CUX1-212ENST00000547394 MYO1EQ12965 1108 aa11.65□□□□□ -0.55
CUX1-212ENST00000547394 FSCN1Q16658 493 aaKnown RBP11.65□□□□□ -0.55
CUX1-212ENST00000547394 CA9Q16790 459 aa11.65□□□□□ -0.55
CUX1-212ENST00000547394 PAN2Q504Q3 1202 aaKnown RBP11.65□□□□□ -0.55
CUX1-212ENST00000547394 GNASQ5JWF2 1037 aa11.65□□□□□ -0.55
CUX1-212ENST00000547394 RHBDF2Q6PJF5 856 aa11.65□□□□□ -0.55
CUX1-212ENST00000547394 ZNF410Q86VK4 478 aa11.65□□□□□ -0.55
CUX1-212ENST00000547394 RBM41Q96IZ5 413 aaKnown RBP11.65□□□□□ -0.55
CUX1-212ENST00000547394 LHX5Q9H2C1 402 aa11.65□□□□□ -0.55
CUX1-212ENST00000547394 ADAM7Q9H2U9 754 aa11.65□□□□□ -0.55
CUX1-212ENST00000547394 NINJ2Q9NZG7 142 aa11.65□□□□□ -0.55
CUX1-212ENST00000547394 USP18Q9UMW8 372 aa11.65□□□□□ -0.55
CUX1-212ENST00000547394 LOC102724159A0A0B4J2E5 919 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 RASGRF2O14827 1237 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 VDRP11473 427 aa11.64□□□□□ -0.55
CUX1-212ENST00000547394 HOXD8P13378 290 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms