RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 SFI1A8K8P3 1242 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 MGRN1O60291 552 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 DLG4P78352 724 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 TP53BP2Q13625 1128 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 TMEM63BQ5T3F8 832 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 ERO1BQ86YB8 467 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 SETD9Q8NE22 299 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 SPATA18Q8TC71 538 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 SNX19Q92543 992 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 ITFG2Q969R8 447 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 DYNLL2Q96FJ2 89 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 FHDC1Q9C0D6 1143 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-212ENST00000546744 HSPBP1Q9NZL4 362 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 COX16Q9P0S2 106 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 SNX13Q9Y5W8 968 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-212ENST00000546744 KATNA1O75449 491 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 KCNA2P16389 499 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 PON1P27169 355 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 MTTPP55157 894 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 USP10Q14694 798 aaKnown RBP13.29□□□□□ -0.28
PTCH1-212ENST00000546744 PID1Q7Z2X4 250 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 C17orf75Q9HAS0 396 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 FANCEQ9HB96 536 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 TOPORSQ9NS56 1045 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-212ENST00000546744 AK9Q5TCS8 1911 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 USP54Q70EL1 1684 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 C15orf38-AP3S2A0A0A6YYH1 394 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 HEATR9A2RTY3 570 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 C2CD2LO14523 706 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 HMGB3O15347 200 aaKnown RBP13.28□□□□□ -0.28
PTCH1-212ENST00000546744 LCA5LO95447 670 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 SERPINE1P05121 402 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 MMP13P45452 471 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 OVGP1Q12889 678 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 PDK1Q15118 436 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 ARPINQ7Z6K5 226 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 C7orf31Q8N865 590 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 ST13P5Q8NFI4 369 aaPredicted RBP13.28□□□□□ -0.28
PTCH1-212ENST00000546744 RNF139Q8WU17 664 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 SKA2Q8WVK7 121 aaPredicted RBP13.28□□□□□ -0.28
PTCH1-212ENST00000546744 BDH2Q9BUT1 245 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 TRIM54Q9BYV2 358 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 CST8O60676 142 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 VCAM1P19320 739 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 HLA-DPA1P20036 260 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 GPC3P51654 580 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 FOXO4P98177 505 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 TOP3AQ13472 1001 aaPredicted RBP13.28□□□□□ -0.28
PTCH1-212ENST00000546744 MTERF2Q49AM1 385 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 TSHZ1Q6ZSZ6 1077 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 CLVS1Q8IUQ0 354 aaPredicted RBP13.28□□□□□ -0.28
PTCH1-212ENST00000546744 CCDC60Q8IWA6 550 aaPredicted RBP13.28□□□□□ -0.28
PTCH1-212ENST00000546744 OR6Y1Q8NGX8 325 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 REEP2Q9BRK0 252 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 GPAMQ9HCL2 828 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 RBAKQ9NYW8 714 aaPredicted RBP13.28□□□□□ -0.28
PTCH1-212ENST00000546744 AP3M1Q9Y2T2 418 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 NEMP1O14524 444 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 ZNF268Q14587 947 aaPredicted RBP13.28□□□□□ -0.28
PTCH1-212ENST00000546744 PDK4Q16654 411 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 CEP78Q5JTW2 689 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 RSBN1Q5VWQ0 802 aaPredicted RBP13.28□□□□□ -0.28
PTCH1-212ENST00000546744 FAM196AQ6ZSG2 479 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 ZNF75CPQ92670 426 aaPredicted RBP13.28□□□□□ -0.28
PTCH1-212ENST00000546744 PGBD4Q96DM1 585 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 OMA1Q96E52 524 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 LXNQ9BS40 222 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 THAP2Q9H0W7 228 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 IL25Q9H293 177 aa13.28□□□□□ -0.28
PTCH1-212ENST00000546744 AGO2Q9UKV8 859 aaKnown RBP13.28□□□□□ -0.28
PTCH1-212ENST00000546744 CDV3Q9UKY7 258 aaKnown RBP13.28□□□□□ -0.28
PTCH1-212ENST00000546744 FAM32AQ9Y421 112 aaKnown RBP13.28□□□□□ -0.28
PTCH1-212ENST00000546744 BCL9O00512 1426 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 M0QYV0 167 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 SLC16A4O15374 487 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 PHGDHO43175 533 aaKnown RBP13.27□□□□□ -0.28
PTCH1-212ENST00000546744 PDE9AO76083 593 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 RTN3O95197 1032 aaPredicted RBP13.27□□□□□ -0.28
PTCH1-212ENST00000546744 FAM153BP0C7A2 387 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 HOXB6P17509 224 aaKnown RBP13.27□□□□□ -0.28
PTCH1-212ENST00000546744 IL12RB1P42701 662 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 KLK7P49862 253 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 FAM153CQ494X1 144 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 KYAT3Q6YP21 454 aaKnown RBP13.27□□□□□ -0.28
PTCH1-212ENST00000546744 ARHGEF19Q8IW93 802 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 SCFD2Q8WU76 684 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 MRPL4Q9BYD3 311 aaKnown RBP13.27□□□□□ -0.28
PTCH1-212ENST00000546744 PCYOX1Q9UHG3 505 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 ADAM30Q9UKF2 790 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 HBS1LQ9Y450 684 aaKnown RBP13.27□□□□□ -0.28
PTCH1-212ENST00000546744 FAM208AQ9UK61 1670 aaKnown RBP13.27□□□□□ -0.28
PTCH1-212ENST00000546744 USP17L5A8MUK1 530 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 KRT20P35900 424 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 PRKCIP41743 596 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 MTMR1Q13613 665 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 TAB1Q15750 504 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 FAM83EQ2M2I3 478 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 TFDP3Q5H9I0 405 aa13.27□□□□□ -0.28
PTCH1-212ENST00000546744 C12orf60Q5U649 245 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms