RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 ZNF606Q8WXB4 792 aa12.91□□□□□ -0.34
DDX55-210ENST00000543016 ZNF512Q96ME7 567 aaPredicted RBP12.91□□□□□ -0.34
DDX55-210ENST00000543016 SEPT5Q99719 369 aaPredicted RBP12.91□□□□□ -0.34
DDX55-210ENST00000543016 DUSP16Q9BY84 665 aa12.91□□□□□ -0.34
DDX55-210ENST00000543016 ADAM7Q9H2U9 754 aa12.91□□□□□ -0.34
DDX55-210ENST00000543016 CSNK1G1Q9HCP0 422 aa12.91□□□□□ -0.34
DDX55-210ENST00000543016 AIPL1Q9NZN9 384 aa12.91□□□□□ -0.34
DDX55-210ENST00000543016 LUC7L2Q9Y383 392 aaKnown RBP12.91□□□□□ -0.34
DDX55-210ENST00000543016 YIPF1Q9Y548 306 aa12.91□□□□□ -0.34
DDX55-210ENST00000543016 GOLGA6L3A6NEY3 463 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 AP1G2O75843 785 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 SPATA31D3P0C874 917 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 SETSIPP0DME0 302 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 CSH1P0DML2 217 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 CSH2P0DML3 217 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 CCDC130P13994 396 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 NPR3P17342 541 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 CYP2F1P24903 491 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 CLCN1P35523 988 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 LTBRP36941 435 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 GRIK1P39086 918 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 PDE6CP51160 858 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 BCAT1P54687 386 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 ORC1Q13415 861 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 CCDC85BQ15834 202 aaPredicted RBP12.9□□□□□ -0.34
DDX55-210ENST00000543016 ATAT1Q5SQI0 421 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 PPP1R26Q5T8A7 1209 aaPredicted RBP12.9□□□□□ -0.34
DDX55-210ENST00000543016 SPATA31D4Q6ZUB0 917 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 PAQR9Q6ZVX9 377 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 GPR149Q86SP6 731 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 BAP1Q92560 729 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 MSLNLQ96KJ4 702 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 RIPOR3Q96MK2 946 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 NECTIN4Q96NY8 510 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 ZNF518BQ9C0D4 1074 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 LHX5Q9H2C1 402 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 UBE2ZQ9H832 354 aaPredicted RBP12.9□□□□□ -0.34
DDX55-210ENST00000543016 AVENQ9NQS1 362 aaPredicted RBP12.9□□□□□ -0.34
DDX55-210ENST00000543016 KRT82Q9NSB4 513 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 FAM49BQ9NUQ9 324 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 CLEC1BQ9P126 229 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 AJAP1Q9UKB5 411 aaPredicted RBP12.9□□□□□ -0.34
DDX55-210ENST00000543016 TSPAN16Q9UKR8 245 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 PCDHGC3Q9UN70 934 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.9□□□□□ -0.34
DDX55-210ENST00000543016 FAM50BQ9Y247 325 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 SLC27A5Q9Y2P5 690 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 CEP83Q9Y592 693 aa12.9□□□□□ -0.34
DDX55-210ENST00000543016 BZW2Q9Y6E2 419 aaKnown RBP12.9□□□□□ -0.34
DDX55-210ENST00000543016 MTCL1Q9Y4B5 1905 aaKnown RBP12.9□□□□□ -0.35
DDX55-210ENST00000543016 CCDC195A0A1B0GUA6 201 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 LINC01565O15544 149 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 THAP12O43422 761 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 TBX10O75333 385 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 RTN3O95197 1032 aaPredicted RBP12.89□□□□□ -0.35
DDX55-210ENST00000543016 CYP11B1P15538 503 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 PTPN2P17706 415 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 ADORA2BP29275 332 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 CDC25BP30305 580 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 KRT9P35527 623 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 MTHFRP42898 656 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 SNX16P57768 344 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 BST2Q10589 180 aaKnown RBP12.89□□□□□ -0.35
DDX55-210ENST00000543016 TWF1Q12792 350 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 TAF12Q16514 161 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 AAK1Q2M2I8 961 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 TSR1Q2NL82 804 aaKnown RBP12.89□□□□□ -0.35
DDX55-210ENST00000543016 SFMBT2Q5VUG0 894 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 SYCE2Q6PIF2 218 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 TRIM72Q6ZMU5 477 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.89□□□□□ -0.35
DDX55-210ENST00000543016 SCN4BQ8IWT1 228 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 DRC7Q8IY82 874 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 STK32AQ8WU08 396 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 TFAP2BQ92481 460 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 PSMG2Q969U7 264 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 S1PR5Q9H228 398 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 CRISPLD1Q9H336 500 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 PIDD1Q9HB75 910 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 CYLDQ9NQC7 956 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 UXTQ9UBK9 157 aaPredicted RBP12.89□□□□□ -0.35
DDX55-210ENST00000543016 CD207Q9UJ71 328 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 ATG2AQ2TAZ0 1938 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 TRANK1O15050 2925 aa12.89□□□□□ -0.35
DDX55-210ENST00000543016 BRWD1Q9NSI6 2320 aa12.88□□□□□ -0.35
DDX55-210ENST00000543016 SOBPA7XYQ1 873 aa12.88□□□□□ -0.35
DDX55-210ENST00000543016 F8VP50 259 aa12.88□□□□□ -0.35
DDX55-210ENST00000543016 CLDN5O00501 218 aa12.88□□□□□ -0.35
DDX55-210ENST00000543016 ZNF197O14709 1029 aa12.88□□□□□ -0.35
DDX55-210ENST00000543016 XPO1O14980 1071 aaKnown RBP12.88□□□□□ -0.35
DDX55-210ENST00000543016 AP5Z1O43299 807 aa12.88□□□□□ -0.35
DDX55-210ENST00000543016 RFPL2O75678 378 aa12.88□□□□□ -0.35
DDX55-210ENST00000543016 GFPT2O94808 682 aa12.88□□□□□ -0.35
DDX55-210ENST00000543016 MICAL2O94851 1124 aa12.88□□□□□ -0.35
DDX55-210ENST00000543016 LSM8O95777 96 aaKnown RBP12.88□□□□□ -0.35
DDX55-210ENST00000543016 GYPCP04921 128 aa12.88□□□□□ -0.35
DDX55-210ENST00000543016 BRD2P25440 801 aaKnown RBP12.88□□□□□ -0.35
DDX55-210ENST00000543016 PRKCIP41743 596 aa12.88□□□□□ -0.35
DDX55-210ENST00000543016 PPP3CCP48454 512 aa12.88□□□□□ -0.35
DDX55-210ENST00000543016 EPHA5P54756 1037 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms