RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 LCLAT1Q6UWP7 414 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 TTC9BQ8N6N2 239 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 ANKRD52Q8NB46 1076 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 PABPC5Q96DU9 382 aaKnown RBP18.15■□□□□ 0.5
LIG1-204ENST00000542460 CLDND1Q9NY35 253 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 HESX1Q9UBX0 185 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 TSPAN16Q9UKR8 245 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 INSL5Q9Y5Q6 135 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 DLL1O00548 723 aa18.14■□□□□ 0.49
LIG1-204ENST00000542460 AP1G2O75843 785 aa18.14■□□□□ 0.49
LIG1-204ENST00000542460 FAM200BP0CF97 657 aa18.14■□□□□ 0.49
LIG1-204ENST00000542460 HOXA9P31269 272 aa18.14■□□□□ 0.49
LIG1-204ENST00000542460 PDE6CP51160 858 aa18.14■□□□□ 0.49
LIG1-204ENST00000542460 RPL10AP62906 217 aaKnown RBP18.14■□□□□ 0.49
LIG1-204ENST00000542460 ARID5AQ03989 594 aa18.14■□□□□ 0.49
LIG1-204ENST00000542460 TBX2Q13207 712 aaPredicted RBP18.14■□□□□ 0.49
LIG1-204ENST00000542460 PLD1Q13393 1074 aa18.14■□□□□ 0.49
LIG1-204ENST00000542460 SCN4BQ8IWT1 228 aa18.14■□□□□ 0.49
LIG1-204ENST00000542460 SYN2Q92777 582 aaPredicted RBP18.14■□□□□ 0.49
LIG1-204ENST00000542460 DUSP16Q9BY84 665 aa18.14■□□□□ 0.49
LIG1-204ENST00000542460 KRT82Q9NSB4 513 aa18.14■□□□□ 0.49
LIG1-204ENST00000542460 ZDHHC7Q9NXF8 308 aa18.14■□□□□ 0.49
LIG1-204ENST00000542460 AIPL1Q9NZN9 384 aa18.14■□□□□ 0.49
LIG1-204ENST00000542460 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.14■□□□□ 0.49
LIG1-204ENST00000542460 YIPF1Q9Y548 306 aa18.14■□□□□ 0.49
LIG1-204ENST00000542460 TRIM66O15016 1216 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 LRG1P02750 347 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 HNRNPA1P09651 372 aaKnown RBP eCLIP18.13■□□□□ 0.49
LIG1-204ENST00000542460 HOXB8P17481 243 aaPredicted RBP18.13■□□□□ 0.49
LIG1-204ENST00000542460 KRT9P35527 623 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 SLC8A3P57103 927 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 MEA1Q16626 185 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 DDR2Q16832 855 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 GOLGA7BQ2TAP0 167 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 ANKRD54Q6NXT1 300 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 EP400NLQ6ZTU2 488 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 IRF2BP2Q7Z5L9 587 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.13■□□□□ 0.49
LIG1-204ENST00000542460 ZNF677Q86XU0 584 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 DRC7Q8IY82 874 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 EPS8L1Q8TE68 723 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 PPM1EQ8WY54 764 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 C8orf48Q96LL4 319 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 CEP295NLQ96MC4 621 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 SFXN1Q9H9B4 322 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 CSNK1G1Q9HCP0 422 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 DMAP1Q9NPF5 467 aaPredicted RBP18.13■□□□□ 0.49
LIG1-204ENST00000542460 VCANP13611 3396 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 RFPL2O75678 378 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 SOAT2O75908 522 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 MICAL2O94851 1124 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 NPR3P17342 541 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 ANXA13P27216 316 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 BCAT1P54687 386 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 EPHB3P54753 998 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 TWF1Q12792 350 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 ASIC2Q16515 512 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 CLEC20AQ6ZU45 233 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 NOP9Q86U38 636 aaKnown RBP18.13■□□□□ 0.49
LIG1-204ENST00000542460 TTC30AQ86WT1 665 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 KCNK16Q96T55 309 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 SMOQ99835 787 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 CLEC1BQ9P126 229 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 PCDHGC3Q9UN70 934 aa18.13■□□□□ 0.49
LIG1-204ENST00000542460 CCDC195A0A1B0GUA6 201 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 F8VP50 259 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 ATF6P18850 670 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 LTBRP36941 435 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 CACNA2D1P54289 1103 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 MAP3K7CLP57077 242 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 BST2Q10589 180 aaKnown RBP18.12■□□□□ 0.49
LIG1-204ENST00000542460 VEPH1Q14D04 833 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 SKIV2LQ15477 1246 aaKnown RBP18.12■□□□□ 0.49
LIG1-204ENST00000542460 PKDCCQ504Y2 493 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 GPIHBP1Q8IV16 184 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 CNGA4Q8IV77 575 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 CMASQ8NFW8 434 aaPredicted RBP18.12■□□□□ 0.49
LIG1-204ENST00000542460 OR8K1Q8NGG5 319 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 DDX1Q92499 740 aaKnown RBP18.12■□□□□ 0.49
LIG1-204ENST00000542460 SPATA17Q96L03 361 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 PRKD2Q9BZL6 878 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 UBXN6Q9BZV1 441 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 TMEM30AQ9NV96 361 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 NOCTQ9UK39 431 aaKnown RBP18.12■□□□□ 0.49
LIG1-204ENST00000542460 ASB3Q9Y575 518 aa18.12■□□□□ 0.49
LIG1-204ENST00000542460 AKR1B15C9JRZ8 316 aaPredicted RBP18.11■□□□□ 0.49
LIG1-204ENST00000542460 M0QYV0 167 aa18.11■□□□□ 0.49
LIG1-204ENST00000542460 MFAP3LO75121 409 aa18.11■□□□□ 0.49
LIG1-204ENST00000542460 XYLBO75191 536 aa18.11■□□□□ 0.49
LIG1-204ENST00000542460 TBX10O75333 385 aa18.11■□□□□ 0.49
LIG1-204ENST00000542460 BEST1O76090 585 aa18.11■□□□□ 0.49
LIG1-204ENST00000542460 PAPLNO95428 1278 aa18.11■□□□□ 0.49
LIG1-204ENST00000542460 POU2F2P09086 479 aa18.11■□□□□ 0.49
LIG1-204ENST00000542460 SETSIPP0DME0 302 aa18.11■□□□□ 0.49
LIG1-204ENST00000542460 PRKCIP41743 596 aa18.11■□□□□ 0.49
LIG1-204ENST00000542460 GPR15P49685 360 aa18.11■□□□□ 0.49
LIG1-204ENST00000542460 CDR2Q01850 454 aa18.11■□□□□ 0.49
LIG1-204ENST00000542460 DLX2Q07687 328 aaPredicted RBP18.11■□□□□ 0.49
LIG1-204ENST00000542460 ARID5BQ14865 1188 aa18.11■□□□□ 0.49
LIG1-204ENST00000542460 TSR1Q2NL82 804 aaKnown RBP18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms