RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	CXorf36	Q9H7Y0	433 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	ZMAT3	Q9HA38	289 aa	Known RBP	4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	NMRK2	Q9NPI5	230 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	ANLN	Q9NQW6	1124 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	DUSP22	Q9NRW4	184 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	ZIM2	Q9NZV7	527 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	GABBR1	Q9UBS5	961 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	COL3A1	P02461	1466 aa	Predicted RBP	4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488		A0A1W2PPL8	197 aa		4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	JTB	O76095	146 aa		4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	PRR35	P0CG20	571 aa		4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	NPR1	P16066	1061 aa		4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	SLC10A2	Q12908	348 aa	Predicted RBP	4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	MYO1E	Q12965	1108 aa		4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	MAPK7	Q13164	816 aa		4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	PROSER3	Q2NL68	480 aa		4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	MTX3	Q5HYI7	312 aa		4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	ANKRD16	Q6P6B7	361 aa		4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	SLC15A3	Q8IY34	581 aa		4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	PNLDC1	Q8NA58	520 aa	Known RBP	4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	SEMA6D	Q8NFY4	1073 aa		4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	SMG7	Q92540	1137 aa	Known RBP	4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	QTRT1	Q9BXR0	403 aa	Known RBP	4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	KRTAP2-2	Q9BYT5	123 aa		4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	PIH1D1	Q9NWS0	290 aa	Known RBP	4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488	SHOC2	Q9UQ13	582 aa		4.9	□□□□□ -1.63
PRKDC-210	ENST00000541488		A0A088AWK7	358 aa		4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	EPHB2	P29323	1055 aa		4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	PPIF	P30405	207 aa	Known RBP	4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	VIPR2	P41587	438 aa		4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	PRKAG1	P54619	331 aa		4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	CTBP1	Q13363	440 aa		4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	CEP78	Q5JTW2	689 aa		4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	AARS2	Q5JTZ9	985 aa	Known RBP	4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	L1TD1	Q5T7N2	865 aa	Known RBP	4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	ZNF626	Q68DY1	528 aa		4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	CYP2W1	Q8TAV3	490 aa		4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	SLC35G2	Q8TBE7	412 aa		4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	TBC1D5	Q92609	795 aa		4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	MOGAT1	Q96PD6	335 aa		4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	TAAR9	Q96RI9	348 aa		4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	DPCD	Q9BVM2	203 aa	Predicted RBP	4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	MS4A7	Q9GZW8	240 aa	Predicted RBP	4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	PNMA8B	Q9ULN7	279 aa	Predicted RBP	4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	ADAMTS5	Q9UNA0	930 aa		4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	MED16	Q9Y2X0	877 aa		4.89	□□□□□ -1.63
PRKDC-210	ENST00000541488	TISP43	B9A030	160 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	AP4M1	O00189	453 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	BTN3A1	O00481	513 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	EXOC3	O60645	756 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	CSF1R	P07333	972 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	NPS	P0C0P6	89 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	GPSM2	P81274	684 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	SATB1	Q01826	763 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	SUPT20HL1	Q3ZLR7	823 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	LMBRD2	Q68DH5	695 aa	Predicted RBP	4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	B3GNT9	Q6UX72	402 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	ZNF783	Q6ZMS7	281 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	PARS2	Q7L3T8	475 aa	Known RBP	4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	EPM2AIP1	Q7L775	607 aa	Predicted RBP	4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	ZNF804A	Q7Z570	1209 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	YTHDF3	Q7Z739	585 aa	Known RBP	4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	OSCP1	Q8WVF1	389 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	CAMKK2	Q96RR4	588 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	B3GNT5	Q9BYG0	378 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488	SNX14	Q9Y5W7	946 aa		4.88	□□□□□ -1.63
PRKDC-210	ENST00000541488		H3BML4	177 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	KEL	P23276	732 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	FPR3	P25089	353 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	PDE6C	P51160	858 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	TPTE	P56180	551 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	SLC13A2	Q13183	592 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	LRRC41	Q15345	812 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	PLA1A	Q53H76	456 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	KRTAP5-1	Q6L8H4	278 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	SLC2A7	Q6PXP3	512 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	NPNT	Q6UXI9	565 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488		Q6ZWC4	215 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	WDR53	Q7Z5U6	358 aa	Predicted RBP	4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	CHSY1	Q86X52	802 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	SCARB1	Q8WTV0	552 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	TRIM54	Q9BYV2	358 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	CDH19	Q9H159	772 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	TYW1	Q9NV66	732 aa	Known RBP	4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	FLRT1	Q9NZU1	646 aa		4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	ZNF70	Q9UC06	446 aa	Predicted RBP	4.87	□□□□□ -1.63
PRKDC-210	ENST00000541488	ERC2	O15083	957 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	PRPF3	O43395	683 aa	Known RBP	4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	TBC1D4	O60343	1298 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	CTNND1	O60716	968 aa	Known RBP	4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	LRPAP1	P30533	357 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	SLC7A1	P30825	629 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	ARHGAP25	P42331	645 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	ALDH5A1	P51649	535 aa	Predicted RBP	4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	ITGA8	P53708	1063 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	TUBA4A	P68366	448 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	KLF9	Q13886	244 aa	Predicted RBP	4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	ETFDH	Q16134	617 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	PTCHD3	Q3KNS1	767 aa		4.86	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms