RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 ICMTO60725 284 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 DEAF1O75398 565 aaPredicted RBP7.04□□□□□ -1.28
USP28-207ENST00000538475 ESRRAP11474 423 aaPredicted RBP7.04□□□□□ -1.28
USP28-207ENST00000538475 PORP16435 677 aaPredicted RBP7.04□□□□□ -1.28
USP28-207ENST00000538475 SLC1A1P43005 524 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 SLCO1A2P46721 670 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 HSPA13P48723 471 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 ADARP55265 1226 aaKnown RBP7.04□□□□□ -1.28
USP28-207ENST00000538475 GPC5P78333 572 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 CDK16Q00536 496 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 ARID5AQ03989 594 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 CBX3Q13185 183 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 PRPF4BQ13523 1007 aaKnown RBP7.04□□□□□ -1.28
USP28-207ENST00000538475 MPP2Q14168 576 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 LRRC14Q15048 493 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 DLGAP5Q15398 846 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 USP41Q3LFD5 358 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 TAF1BQ53T94 588 aaPredicted RBP7.04□□□□□ -1.28
USP28-207ENST00000538475 EAPPQ56P03 285 aaPredicted RBP7.04□□□□□ -1.28
USP28-207ENST00000538475 CFAP157Q5JU67 520 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 SYCP2LQ5T4T6 812 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 DHRS4L2Q6PKH6 230 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 SFR1Q86XK3 245 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 PDSS2Q86YH6 399 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 MAP4K3Q8IVH8 894 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 SLC17A8Q8NDX2 589 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 GDAP1Q8TB36 358 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 MGARPQ8TDB4 240 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 TMEM174Q8WUU8 243 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 CD101Q93033 1021 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 CLMNQ96JQ2 1002 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 FAM81BQ96LP2 452 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 LRGUKQ96M69 825 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 BIRC8Q96P09 236 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 MRPS26Q9BYN8 205 aaKnown RBP7.04□□□□□ -1.28
USP28-207ENST00000538475 CRNKL1Q9BZJ0 848 aaKnown RBP7.04□□□□□ -1.28
USP28-207ENST00000538475 RANBP17Q9H2T7 1088 aaKnown RBP7.04□□□□□ -1.28
USP28-207ENST00000538475 ZNF287Q9HBT7 754 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 SRA1Q9HD15 236 aaKnown RBP7.04□□□□□ -1.28
USP28-207ENST00000538475 ERVK-5Q9HDB9 667 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 SIX2Q9NPC8 291 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 TPSG1Q9NRR2 321 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 NINJ2Q9NZG7 142 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 TUBGCP4Q9UGJ1 667 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 SAP30BPQ9UHR5 308 aaKnown RBP7.04□□□□□ -1.28
USP28-207ENST00000538475 GGT7Q9UJ14 662 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 ANAPC5Q9UJX4 755 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 EXOC7Q9UPT5 735 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 NR2E1Q9Y466 385 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 CICQ96RK0 1608 aaPredicted RBP7.04□□□□□ -1.28
USP28-207ENST00000538475 ZNF142P52746 1687 aaPredicted RBP7.03□□□□□ -1.28
USP28-207ENST00000538475 NHSQ6T4R5 1651 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 A0A0J9YVX5 310 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 TMEM110-MUSTN1A8MSY1 372 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 E9PBE3 544 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 H3BNX3 289 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 LINC01387J3KSC0 135 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 MATN2O00339 956 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 CASQ2O14958 399 aaPredicted RBP7.03□□□□□ -1.28
USP28-207ENST00000538475 PMM2O15305 246 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 EIF3DO15371 548 aaKnown RBP eCLIP7.03□□□□□ -1.28
USP28-207ENST00000538475 SPAG7O75391 227 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 TNFRSF21O75509 655 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 KRT36O76013 467 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 TM7SF2O76062 418 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 ATF2P15336 505 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 GAP43P17677 238 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 PTPRAP18433 802 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 KRT15P19012 456 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 NR2F2P24468 414 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 IVDP26440 423 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 SERPINB3P29508 390 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 PGM1P36871 562 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 TECP42680 631 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 GJA8P48165 433 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 CHN2P52757 468 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 ARFIP2P53365 341 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 BPIFB4P59827 614 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 SIX1Q15475 284 aaPredicted RBP7.03□□□□□ -1.28
USP28-207ENST00000538475 SLC15A2Q16348 729 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 KNOP1Q1ED39 458 aaKnown RBP7.03□□□□□ -1.28
USP28-207ENST00000538475 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.03□□□□□ -1.28
USP28-207ENST00000538475 ANKRD20A4Q4UJ75 823 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 ARMC3Q5W041 872 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 PPP1R2P3Q6NXS1 205 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 FAM117BQ6P1L5 589 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 C1orf228Q6PIY5 440 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 MOXD1Q6UVY6 613 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 DSTYKQ6XUX3 929 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 SEPT14Q6ZU15 432 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 TMEM110Q86TL2 294 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 NLRP10Q86W26 655 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 LRRC6Q86X45 466 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 MAP7D3Q8IWC1 876 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 SCUBE1Q8IWY4 988 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 SRRM1Q8IYB3 904 aaKnown RBP7.03□□□□□ -1.28
USP28-207ENST00000538475 AHI1Q8N157 1196 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 REXO1Q8N1G1 1221 aaKnown RBP7.03□□□□□ -1.28
USP28-207ENST00000538475 BBS5Q8N3I7 341 aa7.03□□□□□ -1.28
USP28-207ENST00000538475 MARVELD2Q8N4S9 558 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms