RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 SH3BP5O60239 455 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 SHBGP04278 402 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 MYL3P08590 195 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 RGS2P41220 211 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 PTPN11Q06124 597 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-210ENST00000538120 ZBTB6Q15916 424 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 ANKRD20A8PQ5CZ79 823 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 UBAP2Q5T6F2 1119 aaKnown RBP11.32□□□□□ -0.6
CLIP1-210ENST00000538120 DNAJC24Q6P3W2 148 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 SLC27A1Q6PCB7 646 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 CATSPER4Q7RTX7 472 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 NT5DC4Q86YG4 428 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 KATNAL2Q8IYT4 538 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-210ENST00000538120 C1orf54Q8WWF1 131 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 TMEM176AQ96HP8 235 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 SNX27Q96L92 541 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 MCEEQ96PE7 176 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 TXLNGYQ9BZA5 131 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 IP6K2Q9UHH9 426 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 GGA2Q9UJY4 613 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 PPEF2O14830 753 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 TCF3P15923 654 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 CDC42EP1Q00587 391 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 INCA1Q0VD86 236 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 KLF1Q13351 362 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-210ENST00000538120 ATP13A4Q4VNC1 1196 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 ALKAL1Q6UXT8 129 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 ARMCX6Q7L4S7 300 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 TRPV1Q8NER1 839 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 PLEKHA5Q9HAU0 1116 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 CHST7Q9NS84 486 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 R3HDM2Q9Y2K5 976 aaKnown RBP11.32□□□□□ -0.6
CLIP1-210ENST00000538120 Q9Y3F1 56 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 HES2Q9Y543 173 aa11.32□□□□□ -0.6
CLIP1-210ENST00000538120 SRRM3A6NNA2 597 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-210ENST00000538120 F8VP50 259 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 CHUKO15111 745 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 MED7O43513 233 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 CAND2O75155 1236 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 MICAL2O94851 1124 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 CYP3A5P20815 502 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 RPL21P46778 160 aaKnown RBP11.31□□□□□ -0.6
CLIP1-210ENST00000538120 CPT1AP50416 773 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 PRSS12P56730 875 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 LSM11P83369 360 aaKnown RBP eCLIP11.31□□□□□ -0.6
CLIP1-210ENST00000538120 CRHR2Q13324 411 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 FUKQ8N0W3 1084 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 C3orf20Q8ND61 904 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 APBA2Q99767 749 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.31□□□□□ -0.6
CLIP1-210ENST00000538120 DERAQ9Y315 318 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.31□□□□□ -0.6
CLIP1-210ENST00000538120 TRPM7Q96QT4 1865 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 PODXLO00592 558 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 RALAP11233 206 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 HOXC8P31273 242 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 SNX17Q15036 470 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 AGBL2Q5U5Z8 902 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 TXNRD3NBQ6F5E7 133 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 CYB5D1Q6P9G0 228 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 TTC13Q8NBP0 860 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 EXD1Q8NHP7 514 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 JOSD2Q8TAC2 188 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 ATG4AQ8WYN0 398 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 SLCO2A1Q92959 643 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 C18orf25Q96B23 403 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-210ENST00000538120 CPXM1Q96SM3 734 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 ZIC5Q96T25 663 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 PLVAPQ9BX97 442 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 HEMGNQ9BXL5 484 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 DCLK3Q9C098 648 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 AP5M1Q9H0R1 490 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 RNF19AQ9NV58 838 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 TUBGCP4Q9UGJ1 667 aa11.31□□□□□ -0.6
CLIP1-210ENST00000538120 BARX2Q9UMQ3 279 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-210ENST00000538120 MYADML2A6NDP7 307 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 C5orf60A6NFR6 353 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 PPFIA2O75334 1257 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 ERBB2P04626 1255 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 VDRP11473 427 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 P4HA1P13674 534 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 DRD4P21917 467 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 RFC1P35251 1148 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-210ENST00000538120 GPD2P43304 727 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 SCTRP47872 440 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 NDST1P52848 882 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 INHBEP58166 350 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 PURAQ00577 322 aaKnown RBP11.3□□□□□ -0.6
CLIP1-210ENST00000538120 CNGA2Q16280 664 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 SGO2Q562F6 1265 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 UBXN11Q5T124 520 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 NOTUMQ6P988 496 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 CCDC105Q8IYK2 499 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 CACNA2D3Q8IZS8 1091 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 ARFGAP1Q8N6T3 406 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 NIPA2Q8N8Q9 360 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 SOCS4Q8WXH5 440 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 RUNDC3BQ96NL0 473 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 EPB41L4BQ9H329 900 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms