RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 NCDNQ9UBB6 729 aa17.3■□□□□ 0.36
CLSTN3-204ENST00000535313 USP25Q9UHP3 1055 aa17.3■□□□□ 0.36
CLSTN3-204ENST00000535313 ACTN4O43707 911 aaKnown RBP17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 TACC1O75410 805 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 TADA3O75528 432 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 TDGF1P13385 188 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 PFKFB1P16118 471 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 BDNFP23560 247 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 CMA1P23946 247 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 ID4P47928 161 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 KRT85P78386 507 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 AMPD2Q01433 879 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 SATB1Q01826 763 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 PSMD2Q13200 908 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 RUNX3Q13761 415 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 SYNPOQ8N3V7 929 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 MYCBPAPQ8TBZ2 947 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 SYAP1Q96A49 352 aaPredicted RBP17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 SPATA17Q96L03 361 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 SPATA32Q96LK8 384 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 MRPL45Q9BRJ2 306 aaKnown RBP17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 EPC1Q9H2F5 836 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 EBF3Q9H4W6 596 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 EHD2Q9NZN4 543 aa17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 SMG5Q9UPR3 1016 aaKnown RBP17.29■□□□□ 0.36
CLSTN3-204ENST00000535313 ZNF638Q14966 1978 aaKnown RBP17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 DENND4CQ5VZ89 1909 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 A0A1B0GVL5 298 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 TRIM66O15016 1216 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 KLRC4O43908 158 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 CLSTN1O94985 981 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 STAU1O95793 577 aaKnown RBP17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 MYL1P05976 194 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 CKMP06732 381 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 USP17L7P0C7H9 530 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 ATICP31939 592 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 PDE6CP51160 858 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 AP3M2P53677 418 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 MYL6P60660 151 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 FAM160A1Q05DH4 1040 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 STK4Q13043 487 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 BIRC3Q13489 604 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 GAS6Q14393 721 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 PDGFRLQ15198 375 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 KMT5BQ4FZB7 885 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 MDH1BQ5I0G3 518 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 TRIM68Q6AZZ1 485 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 Q6ZS52 159 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 DCLK2Q8N568 766 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 ZNF516Q92618 1163 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 PCED1BQ96HM7 432 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 HPS4Q9NQG7 708 aa17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 NXF1Q9UBU9 619 aaKnown RBP17.28■□□□□ 0.36
CLSTN3-204ENST00000535313 CASP4P49662 377 aa17.27■□□□□ 0.36
CLSTN3-204ENST00000535313 GRSF1Q12849 480 aaKnown RBP eCLIP17.27■□□□□ 0.36
CLSTN3-204ENST00000535313 CCINQ13939 588 aa17.27■□□□□ 0.36
CLSTN3-204ENST00000535313 KCNB1Q14721 858 aa17.27■□□□□ 0.36
CLSTN3-204ENST00000535313 MTF1Q14872 753 aa17.27■□□□□ 0.36
CLSTN3-204ENST00000535313 DENND5BQ6ZUT9 1274 aa17.27■□□□□ 0.36
CLSTN3-204ENST00000535313 KIAA0895Q8NCT3 520 aa17.27■□□□□ 0.36
CLSTN3-204ENST00000535313 TTC16Q8NEE8 873 aa17.27■□□□□ 0.36
CLSTN3-204ENST00000535313 EXOC4Q96A65 974 aa17.27■□□□□ 0.36
CLSTN3-204ENST00000535313 CYP2S1Q96SQ9 504 aa17.27■□□□□ 0.36
CLSTN3-204ENST00000535313 RAB23Q9ULC3 237 aa17.27■□□□□ 0.36
CLSTN3-204ENST00000535313 A8MXQ7 604 aa17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 PAPSS2O95340 614 aaPredicted RBP17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 ARSAP15289 507 aa17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 PTPN1P18031 435 aaKnown RBP17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 HDCP19113 662 aa17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 SYKP43405 635 aa17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 FOXK2Q01167 660 aa17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 WDR44Q5JSH3 913 aa17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 SLC9A9Q8IVB4 645 aa17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 GPR161Q8N6U8 529 aaKnown RBP17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 ARL14EPQ8N8R7 260 aaPredicted RBP17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 CCDC47Q96A33 483 aaKnown RBP17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 GZF1Q9H116 711 aaPredicted RBP17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 XYLT2Q9H1B5 865 aa17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 DUS2Q9NX74 493 aaKnown RBP17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 TRPM5Q9NZQ8 1165 aa17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 GMEB2Q9UKD1 530 aa17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 ATP6V1DQ9Y5K8 247 aa17.26■□□□□ 0.35
CLSTN3-204ENST00000535313 OBSL1O75147 1896 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 C2orf78A6NCI8 922 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 F8VP50 259 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 IFNAR2P48551 515 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 ZNF77Q15935 545 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 ZNF699Q32M78 642 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 ZNF667Q5HYK9 610 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 TDRD10Q5VZ19 366 aaKnown RBP17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 CPA6Q8N4T0 437 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 RIN3Q8TB24 985 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 PARD3BQ8TEW8 1205 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 OSCP1Q8WVF1 389 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 C8orf48Q96LL4 319 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 SLC22A12Q96S37 553 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 ELOVL4Q9GZR5 314 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 VRTNQ9H8Y1 702 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 DMAC2Q9NW81 257 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 GCNT4Q9P109 453 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms