RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 CELF5Q8N6W0 485 aaKnown RBP11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 OR6B3Q8NGW1 331 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 MYCBPAPQ8TBZ2 947 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 CSGALNACT1Q8TDX6 532 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 NELL1Q92832 810 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 CHFRQ96EP1 664 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 GCNAQ96QF7 691 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 FAM83CQ9BQN1 747 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 B3GNT5Q9BYG0 378 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 CHRDQ9H2X0 955 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 SNX25Q9H3E2 840 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 VRTNQ9H8Y1 702 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 HPS4Q9NQG7 708 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 GKN1Q9NS71 199 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 RBM12Q9NTZ6 932 aaKnown RBP11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 GCNT4Q9P109 453 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 NXF1Q9UBU9 619 aaKnown RBP11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 MAPK8IP1Q9UQF2 711 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 TRAF3IP3Q9Y228 551 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 PTPRDP23468 1912 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 GREB1Q4ZG55 1949 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 VPS13AQ96RL7 3174 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 DMDP11532 3685 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 ANAPC1Q9H1A4 1944 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 C2orf78A6NCI8 922 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 SPECC1L-ADORA2AF8WAN1 911 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 CLDN5O00501 218 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 LAMTOR5O43504 91 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 PHACTR2O75167 634 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 HOXC13P31276 330 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 ATICP31939 592 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 CTHP32929 405 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 MAGEA9P43362 315 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 KPNA1P52294 538 aaPredicted RBP11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 TNNC1P63316 161 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 CYP27A1Q02318 531 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 MAPK8IP2Q13387 824 aaPredicted RBP11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 BIRC3Q13489 604 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 NCOA4Q13772 614 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 ZNF528Q3MIS6 628 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 TRIM68Q6AZZ1 485 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 VSTM1Q6UX27 236 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 C4orf50Q6ZRC1 276 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 PAQR9Q6ZVX9 377 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 ADSSL1Q8N142 457 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 TMC2Q8TDI7 906 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 MRPS31Q92665 395 aaKnown RBP11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 SYAP1Q96A49 352 aaPredicted RBP11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 SPATA17Q96L03 361 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 ZNF518BQ9C0D4 1074 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 C8orf33Q9H7E9 229 aaPredicted RBP11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 PRMT8Q9NR22 394 aaPredicted RBP11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 TDP1Q9NUW8 608 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 C2orf42Q9NWW7 574 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 FBXO4Q9UKT5 387 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 ATP6V1DQ9Y5K8 247 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 KIF26AQ9ULI4 1882 aaPredicted RBP11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 ZNF292O60281 2723 aa11.14□□□□□ -0.63
PRPF40B-204ENST00000527253 WDR87Q6ZQQ6 2873 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 SOBPA7XYQ1 873 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 A8MXQ7 604 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 F8VP50 259 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 NCAM2O15394 837 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 AKAP3O75969 853 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 ARSAP15289 507 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 DDX6P26196 483 aaKnown RBP eCLIP11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 AVPR1AP37288 418 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 GRIK1P39086 918 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 AP3M2P53677 418 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 ZXDBP98169 803 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 ZNF268Q14587 947 aaPredicted RBP11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 KCNB1Q14721 858 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 MAPRE1Q15691 268 aaKnown RBP11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 ZACNQ401N2 412 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 CEP135Q66GS9 1140 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 NAIF1Q69YI7 327 aaPredicted RBP11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 SPOPLQ6IQ16 392 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 SCARA5Q6ZMJ2 495 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 MAMSTRQ6ZN01 415 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 Q6ZS52 159 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 SV2AQ7L0J3 742 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 SMYD4Q8IYR2 804 aaPredicted RBP11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 FMR1NBQ8N0W7 255 aaPredicted RBP11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 ARL14EPQ8N8R7 260 aaPredicted RBP11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 SUMF1Q8NBK3 374 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 ENGASEQ8NFI3 743 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 C8orf48Q96LL4 319 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 TRPC7Q9HCX4 862 aa11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 UXTQ9UBK9 157 aaPredicted RBP11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 ZNF638Q14966 1978 aaKnown RBP11.13□□□□□ -0.63
PRPF40B-204ENST00000527253 CALUO43852 315 aaPredicted RBP11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 LMNAP02545 664 aaKnown RBP11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 TRIM49P0CI25 452 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 TRIM49CP0CI26 452 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 VAMP7P51809 220 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 MCCD1P59942 119 aaPredicted RBP11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 PLCB2Q00722 1185 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 SATB1Q01826 763 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 PPP3CAQ08209 521 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 ORC1Q13415 861 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms