RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PHKA2P46019 1235 aa22.27■■□□□ 1.16
VPS28-205ENST00000526204 CDH8P55286 799 aa22.27■■□□□ 1.16
VPS28-205ENST00000526204 KCTD2Q14681 263 aa22.27■■□□□ 1.16
VPS28-205ENST00000526204 R3HDM1Q15032 1099 aaKnown RBP22.27■■□□□ 1.16
VPS28-205ENST00000526204 FAM187BQ17R55 369 aa22.27■■□□□ 1.16
VPS28-205ENST00000526204 FAM228AQ86W67 206 aa22.27■■□□□ 1.16
VPS28-205ENST00000526204 FITM2Q8N6M3 262 aa22.27■■□□□ 1.16
VPS28-205ENST00000526204 MCRS1Q96EZ8 462 aa22.27■■□□□ 1.16
VPS28-205ENST00000526204 ASNSD1Q9NWL6 643 aa22.27■■□□□ 1.16
VPS28-205ENST00000526204 GGT7Q9UJ14 662 aa22.27■■□□□ 1.16
VPS28-205ENST00000526204 DNAJC25-GNG10A0A024R161 153 aa22.27■■□□□ 1.15
VPS28-205ENST00000526204 A0A1B0GUA9 196 aa22.27■■□□□ 1.15
VPS28-205ENST00000526204 NFICP08651 508 aa22.27■■□□□ 1.15
VPS28-205ENST00000526204 MCF2P10911 925 aa22.27■■□□□ 1.15
VPS28-205ENST00000526204 NQO1P15559 274 aaKnown RBP22.27■■□□□ 1.15
VPS28-205ENST00000526204 TSHRP16473 764 aa22.27■■□□□ 1.15
VPS28-205ENST00000526204 RPL22P35268 128 aaKnown RBP22.27■■□□□ 1.15
VPS28-205ENST00000526204 SKIV2L2P42285 1042 aaKnown RBP22.27■■□□□ 1.15
VPS28-205ENST00000526204 CLCN3P51790 818 aa22.27■■□□□ 1.15
VPS28-205ENST00000526204 GPX6P59796 221 aa22.27■■□□□ 1.15
VPS28-205ENST00000526204 PDE4CQ08493 712 aa22.27■■□□□ 1.15
VPS28-205ENST00000526204 PDK4Q16654 411 aa22.27■■□□□ 1.15
VPS28-205ENST00000526204 CDR2LQ86X02 465 aaPredicted RBP22.27■■□□□ 1.15
VPS28-205ENST00000526204 SDCBP2Q9H190 292 aa22.27■■□□□ 1.15
VPS28-205ENST00000526204 ASB7Q9H672 318 aa22.27■■□□□ 1.15
VPS28-205ENST00000526204 MINDY3Q9H8M7 445 aa22.27■■□□□ 1.15
VPS28-205ENST00000526204 RABGEF1Q9UJ41 708 aa22.27■■□□□ 1.15
VPS28-205ENST00000526204 ZMYND8Q9ULU4 1186 aaPredicted RBP22.27■■□□□ 1.15
VPS28-205ENST00000526204 WDR3Q9UNX4 943 aaKnown RBP eCLIP22.27■■□□□ 1.15
VPS28-205ENST00000526204 LACTBL1A8MY62 500 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 E7ESA3 106 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 GOLGA8MH3BSY2 632 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 CXCL11O14625 94 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 STAG3L1P0CL83 205 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 PCK1P35558 622 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 GDF10P55107 478 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 KYAT1Q16773 422 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 KLHL38Q2WGJ6 581 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 CAPN12Q6ZSI9 719 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 RFX6Q8HWS3 928 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 TMEM192Q8IY95 271 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 EMC1Q8N766 993 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 ZNF668Q96K58 619 aaPredicted RBP22.26■■□□□ 1.15
VPS28-205ENST00000526204 FAM124BQ9H5Z6 455 aaPredicted RBP22.26■■□□□ 1.15
VPS28-205ENST00000526204 RSAD1Q9HA92 442 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 USP18Q9UMW8 372 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 LRRC37A2A6NM11 1700 aa22.26■■□□□ 1.15
VPS28-205ENST00000526204 LOC102724159A0A0B4J2E5 919 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 GPR25O00155 361 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 MICAL2O94851 1124 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 ITGB3P05106 788 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 VDRP11473 427 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 CA4P22748 312 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 MIPP30301 263 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 IREB2P48200 963 aaKnown RBP22.25■■□□□ 1.15
VPS28-205ENST00000526204 PWP2Q15269 919 aaKnown RBP22.25■■□□□ 1.15
VPS28-205ENST00000526204 PREPLQ4J6C6 727 aaPredicted RBP22.25■■□□□ 1.15
VPS28-205ENST00000526204 ANKMY2Q8IV38 441 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 PDIK1LQ8N165 341 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 KLHL29Q96CT2 875 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 MMP19Q99542 508 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 MIS12Q9H081 205 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 SMYD3Q9H7B4 428 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 ERAP1Q9NZ08 941 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 PCSK1NQ9UHG2 260 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 CLUHO75153 1309 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 MCF2LO15068 1137 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 TYROBPO43914 113 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 TRUB2O95900 331 aaKnown RBP22.25■■□□□ 1.15
VPS28-205ENST00000526204 TXNP10599 105 aaKnown RBP22.25■■□□□ 1.15
VPS28-205ENST00000526204 GBP2P32456 591 aaPredicted RBP22.25■■□□□ 1.15
VPS28-205ENST00000526204 RPA3P35244 121 aaPredicted RBP22.25■■□□□ 1.15
VPS28-205ENST00000526204 EIF3EP60228 445 aaKnown RBP22.25■■□□□ 1.15
VPS28-205ENST00000526204 WLSQ5T9L3 541 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 WDR78Q5VTH9 848 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 JADE1Q6IE81 842 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 PNMA8AQ86V59 439 aaPredicted RBP22.25■■□□□ 1.15
VPS28-205ENST00000526204 RMDN2Q96LZ7 410 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 TACO1Q9BSH4 297 aaKnown RBP22.25■■□□□ 1.15
VPS28-205ENST00000526204 ELOVL4Q9GZR5 314 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 NOD2Q9HC29 1040 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 PHTF1Q9UMS5 762 aa22.25■■□□□ 1.15
VPS28-205ENST00000526204 PTPRFP10586 1907 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 M0QYV0 167 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 ZWINTO95229 277 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 CD48P09326 243 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 ATP2A2P16615 1042 aaKnown RBP22.24■■□□□ 1.15
VPS28-205ENST00000526204 STIP1P31948 543 aaKnown RBP22.24■■□□□ 1.15
VPS28-205ENST00000526204 GPD2P43304 727 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 TTLL4Q14679 1199 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 ZNF484Q5JVG2 852 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 FNBP1LQ5T0N5 605 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 ANKRD22Q5VYY1 191 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 C3orf62Q6ZUJ4 267 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 FAM47EQ6ZV65 393 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 ERO1BQ86YB8 467 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 FBXO16Q8IX29 292 aaPredicted RBP22.24■■□□□ 1.15
VPS28-205ENST00000526204 C4orf33Q8N1A6 199 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 TTC39CQ8N584 583 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 CXorf38Q8TB03 319 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms