RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 TNIP3Q96KP6 325 aa4.71□□□□□ -1.66
CD44-219ENST00000525685 MRGPRX1Q96LB2 322 aa4.71□□□□□ -1.66
CD44-219ENST00000525685 Q96MF0 132 aa4.71□□□□□ -1.66
CD44-219ENST00000525685 C22orf23Q9BZE7 217 aa4.71□□□□□ -1.66
CD44-219ENST00000525685 TTYH3Q9C0H2 523 aa4.71□□□□□ -1.66
CD44-219ENST00000525685 ATP6V0A4Q9HBG4 840 aa4.71□□□□□ -1.66
CD44-219ENST00000525685 GALNT9Q9HCQ5 603 aa4.71□□□□□ -1.66
CD44-219ENST00000525685 CPNE7Q9UBL6 633 aa4.71□□□□□ -1.66
CD44-219ENST00000525685 CORO2BQ9UQ03 480 aa4.71□□□□□ -1.66
CD44-219ENST00000525685 RAD54BQ9Y620 910 aa4.71□□□□□ -1.66
CD44-219ENST00000525685 PTPN23Q9H3S7 1636 aa4.71□□□□□ -1.66
CD44-219ENST00000525685 MIA2Q96PC5 1412 aa4.71□□□□□ -1.66
CD44-219ENST00000525685 KIAA1107Q9UPP5 1409 aa4.71□□□□□ -1.66
CD44-219ENST00000525685 KIDINS220Q9ULH0 1771 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 CROCC2H7BZ55 1655 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 TCOF1Q13428 1488 aaKnown RBP4.7□□□□□ -1.66
CD44-219ENST00000525685 CCDC141Q6ZP82 1450 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 MAGI2Q86UL8 1455 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 MLH3Q9UHC1 1453 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 TRGV11A0A075B6L2 103 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 PRSS29PA6NIE9 313 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 F5H697 171 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 RASSF9O75901 435 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 PIM1P11309 404 aaPredicted RBP4.7□□□□□ -1.66
CD44-219ENST00000525685 PHKG2P15735 406 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 KCNA2P16389 499 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 PLA2G5P39877 138 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 UCP3P55916 312 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 SEMA5AQ13591 1074 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 CYP2A13Q16696 494 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 CD300EQ496F6 205 aaPredicted RBP4.7□□□□□ -1.66
CD44-219ENST00000525685 LONRF3Q496Y0 759 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 IL31Q6EBC2 164 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 ADGRG3Q86Y34 549 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 DNAJC5GQ8N7S2 189 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 PSD4Q8NDX1 1056 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 NTN5Q8WTR8 489 aaPredicted RBP4.7□□□□□ -1.66
CD44-219ENST00000525685 SLC9A6Q92581 669 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 ZNF764Q96H86 408 aaPredicted RBP4.7□□□□□ -1.66
CD44-219ENST00000525685 STK31Q9BXU1 1019 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 DDX21Q9NR30 783 aaKnown RBP eCLIP4.7□□□□□ -1.66
CD44-219ENST00000525685 HSFX1Q9UBD0 423 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 CFDP1Q9UEE9 299 aaPredicted RBP4.7□□□□□ -1.66
CD44-219ENST00000525685 AFF4Q9UHB7 1163 aaKnown RBP4.7□□□□□ -1.66
CD44-219ENST00000525685 AGAP1Q9UPQ3 857 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 MED16Q9Y2X0 877 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 POLR2AP24928 1970 aaKnown RBP4.7□□□□□ -1.66
CD44-219ENST00000525685 ATP7AQ04656 1500 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 C9orf84Q5VXU9 1444 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 FGD6Q6ZV73 1430 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 SALL3Q9BXA9 1300 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 ZNF644Q9H582 1327 aaPredicted RBP4.7□□□□□ -1.66
CD44-219ENST00000525685 REREQ9P2R6 1566 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 MAST1Q9Y2H9 1570 aa4.7□□□□□ -1.66
CD44-219ENST00000525685 BCORL1Q5H9F3 1711 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 DNMT1P26358 1616 aaKnown RBP4.69□□□□□ -1.66
CD44-219ENST00000525685 CCDC194A0A1B0GVG4 234 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 MYADML2A6NDP7 307 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 E9PLN8 166 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 TBX3O15119 743 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 FRS3O43559 492 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 XRCC6P12956 609 aaKnown RBP eCLIP4.69□□□□□ -1.66
CD44-219ENST00000525685 RPL17P18621 184 aaKnown RBP4.69□□□□□ -1.66
CD44-219ENST00000525685 EN2P19622 333 aaPredicted RBP4.69□□□□□ -1.66
CD44-219ENST00000525685 CXCR5P32302 372 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 NEK3P51956 506 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 RPS7P62081 194 aaKnown RBP4.69□□□□□ -1.66
CD44-219ENST00000525685 FMO1Q01740 532 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 KRT17Q04695 432 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 CTBP1Q13363 440 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 OS9Q13438 667 aaPredicted RBP4.69□□□□□ -1.66
CD44-219ENST00000525685 GALEQ14376 348 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 IQCB1Q15051 598 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 Q6ZNX1 250 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 SIMC1Q8NDZ2 872 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 ACRBPQ8NEB7 543 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 PARD3BQ8TEW8 1205 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 SNX19Q92543 992 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 ANKS1AQ92625 1134 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 SLC46A1Q96NT5 459 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 TBCBQ99426 244 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 VKORC1Q9BQB6 163 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 TRIM54Q9BYV2 358 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 MS4A7Q9GZW8 240 aaPredicted RBP4.69□□□□□ -1.66
CD44-219ENST00000525685 R3HDMLQ9H3Y0 253 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 PNPLA8Q9NP80 782 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 TBCCD1Q9NVR7 557 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 XPR1Q9UBH6 696 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 ITGB1BP2Q9UKP3 347 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 HDAC9Q9UKV0 1011 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 PAXBP1Q9Y5B6 917 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 ADGBQ8N7X0 1667 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 PLXNC1O60486 1568 aa4.69□□□□□ -1.66
CD44-219ENST00000525685 ADAMTSL3P82987 1691 aa4.68□□□□□ -1.66
CD44-219ENST00000525685 PRAMEF33A0A0G2JMD5 474 aa4.68□□□□□ -1.66
CD44-219ENST00000525685 ANO9A1A5B4 782 aa4.68□□□□□ -1.66
CD44-219ENST00000525685 TRIAP1O43715 76 aa4.68□□□□□ -1.66
CD44-219ENST00000525685 PRAMEF10O60809 474 aa4.68□□□□□ -1.66
CD44-219ENST00000525685 SOAT2O75908 522 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms