RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 GRIK1P39086 918 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 NFIL3Q16649 462 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 CCL15Q16663 113 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 BOLA3Q53S33 107 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 FSCBQ5H9T9 825 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 TTC39CQ8N584 583 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 IPMKQ8NFU5 416 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 E2F7Q96AV8 911 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 ETAA1Q9NY74 926 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 UBP1Q9NZI7 540 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 TIMM13Q9Y5L4 95 aaPredicted RBP12.19□□□□□ -0.46
SYNPO-204ENST00000519664 RPS6KL1Q9Y6S9 549 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 EEF2KO00418 725 aaKnown RBP12.19□□□□□ -0.46
SYNPO-204ENST00000519664 IL18RAPO95256 599 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 YY1P25490 414 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 HSD17B4P51659 736 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 RPL7AP62424 266 aaKnown RBP12.19□□□□□ -0.46
SYNPO-204ENST00000519664 ITGB3BPQ13352 177 aaPredicted RBP12.19□□□□□ -0.46
SYNPO-204ENST00000519664 MYBPC2Q14324 1141 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 CRY2Q49AN0 593 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 GNASQ5JWF2 1037 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 ANKRD13AQ8IZ07 590 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 ARHGAP18Q8N392 663 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 TMEM161BQ8NDZ6 487 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 IFT43Q96FT9 208 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 FAM210AQ96ND0 272 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 OSMRQ99650 979 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 EPAS1Q99814 870 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 UNKQ9C0B0 810 aaKnown RBP12.19□□□□□ -0.46
SYNPO-204ENST00000519664 BAG5Q9UL15 447 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 TAF1CQ15572 869 aaPredicted RBP12.18□□□□□ -0.46
SYNPO-204ENST00000519664 PKN2Q16513 984 aaKnown RBP12.18□□□□□ -0.46
SYNPO-204ENST00000519664 C15orf52Q6ZUT6 534 aaKnown RBP12.18□□□□□ -0.46
SYNPO-204ENST00000519664 MTDHQ86UE4 582 aaKnown RBP12.18□□□□□ -0.46
SYNPO-204ENST00000519664 MAP4K3Q8IVH8 894 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 GPRC5AQ8NFJ5 357 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 COPS5Q92905 334 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 FAM136AQ96C01 138 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 CENPKQ9BS16 269 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 EFHD1Q9BUP0 239 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 SPATC1LQ9H0A9 340 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 TASP1Q9H6P5 420 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 ERVK-5Q9HDB9 667 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 C20orf96Q9NUD7 363 aaPredicted RBP12.18□□□□□ -0.46
SYNPO-204ENST00000519664 DDIT4Q9NX09 232 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 SLC39A10Q9ULF5 831 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 C3orf70A6NLC5 250 aaPredicted RBP12.18□□□□□ -0.46
SYNPO-204ENST00000519664 PMPCBO75439 489 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 PAMP19021 973 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 STIP1P31948 543 aaKnown RBP12.18□□□□□ -0.46
SYNPO-204ENST00000519664 DSG3P32926 999 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 GJC2Q5T442 439 aaPredicted RBP12.18□□□□□ -0.46
SYNPO-204ENST00000519664 VSIG10LQ86VR7 867 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 SLC25A41Q8N5S1 370 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 TEX9Q8N6V9 391 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 OR5B17Q8NGF7 314 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 RMDN1Q96DB5 314 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 MTBPQ96DY7 904 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 NR2E1Q9Y466 385 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 ZC3H11AO75152 810 aaKnown RBP eCLIP12.18□□□□□ -0.46
SYNPO-204ENST00000519664 PYGBP11216 843 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 CPB1P15086 417 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 GCNT1Q02742 428 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 ZBTB17Q13105 803 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 HIC1Q14526 733 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 TTC8Q8TAM2 541 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 FOXP3Q9BZS1 431 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 SP110Q9HB58 689 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 NINJ2Q9NZG7 142 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 VIRMAQ69YN4 1812 aaKnown RBP12.18□□□□□ -0.46
SYNPO-204ENST00000519664 TAC1P20366 129 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 RPS12P25398 132 aaKnown RBP12.18□□□□□ -0.46
SYNPO-204ENST00000519664 FMO1Q01740 532 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 SNAPC2Q13487 334 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 ITPRIPL1Q6GPH6 555 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 PRPF39Q86UA1 669 aaKnown RBP12.18□□□□□ -0.46
SYNPO-204ENST00000519664 IFNEQ86WN2 208 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 TRIML2Q8N7C3 387 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 L3MBTL3Q96JM7 780 aaPredicted RBP12.18□□□□□ -0.46
SYNPO-204ENST00000519664 SETD4Q9NVD3 440 aa12.18□□□□□ -0.46
SYNPO-204ENST00000519664 TYW5A2RUC4 315 aaKnown RBP12.17□□□□□ -0.46
SYNPO-204ENST00000519664 B3GAT3O94766 335 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 SLC25A27O95847 323 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 AKAP5P24588 427 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 ELK3P41970 407 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 AP2B1P63010 937 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 HASPINQ8TF76 798 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 SEMA4DQ92854 862 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 TMA16Q96EY4 203 aaKnown RBP12.17□□□□□ -0.46
SYNPO-204ENST00000519664 STAMBPL1Q96FJ0 436 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 TMEM237Q96Q45 408 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 TRPV6Q9H1D0 765 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 VAV3Q9UKW4 847 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 FOXO6A8MYZ6 492 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 S100BP04271 92 aaPredicted RBP12.17□□□□□ -0.46
SYNPO-204ENST00000519664 SNHG28P0DPA3 235 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 ACAT1P24752 427 aaKnown RBP12.17□□□□□ -0.46
SYNPO-204ENST00000519664 GLRBP48167 497 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 LAYNQ6UX15 382 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 METTL7BQ6UX53 244 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms