RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CLK4Q9HAZ1 481 aaKnown RBP12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 KLHL3Q9UH77 587 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 MON2Q7Z3U7 1717 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 LOC100653049A0A140TA62 436 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 A0A1W2PPW3 197 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 CFAP99D6REC4 459 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 KRT34O76011 436 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 CLK3P49761 638 aaKnown RBP12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 BMXP51813 675 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 NDST2P52849 883 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 RCAN1P53805 252 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 TPTEP56180 551 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 COASYQ13057 564 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 GRB10Q13322 594 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 MTM1Q13496 603 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 ZNF746Q6NUN9 644 aaPredicted RBP12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 KYAT3Q6YP21 454 aaKnown RBP12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 AK8Q96MA6 479 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 ZBTB3Q9H5J0 574 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 SENP1Q9P0U3 644 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 CAPN14A8MX76 684 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 CYTH3O43739 400 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 CIAO1O76071 339 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 MYO1DO94832 1006 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 GGPS1O95749 300 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 XRCC5P13010 732 aaKnown RBP12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 JAK1P23458 1154 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 GPC3P51654 580 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 RPS3AP61247 264 aaKnown RBP12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 PEX6Q13608 980 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 HERC4Q5GLZ8 1057 aaPredicted RBP12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 IL23RQ5VWK5 629 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 GSTA5Q7RTV2 222 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 PTCD2Q8WV60 388 aaKnown RBP12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 SCFD1Q8WVM8 642 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 SLC5A5Q92911 643 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 FAR2Q96K12 515 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 FAM111AQ96PZ2 611 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 PCDHA6Q9UN73 950 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 POMPQ9Y244 141 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 PCDHA8Q9Y5H6 950 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 CORINQ9Y5Q5 1042 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 TCRBV5S4A2TA0A5A2 114 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 CASQ2O14958 399 aaPredicted RBP12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 LDHBP07195 334 aaKnown RBP12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 UBL4AP11441 157 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 PSMC3P17980 439 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 ESRRGP62508 458 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 RARS2Q5T160 578 aaKnown RBP12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 CCDC81Q6ZN84 652 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 DENND5BQ6ZUT9 1274 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 GPR141Q7Z602 305 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 PQLC1Q8N2U9 271 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 PCYOX1LQ8NBM8 494 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 ISOC1Q96CN7 298 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 ACAP3Q96P50 834 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 HEMGNQ9BXL5 484 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 GLT8D2Q9H1C3 349 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 RAB26Q9ULW5 256 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 PCDHGA8Q9Y5G5 932 aa12.56□□□□□ -0.4
LIMCH1-213ENST00000511496 TTC34A8MYJ7 566 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 LRRN2O75325 713 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 ATE1O95260 518 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 RPL10P27635 214 aaKnown RBP12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 AQP5P55064 265 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 SIX1Q15475 284 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 NRF1Q16656 503 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 CYP1B1Q16678 543 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 OGFRL1Q5TC84 451 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 DCLRE1AQ6PJP8 1040 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 KCNK18Q7Z418 384 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 SLC38A6Q8IZM9 456 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 CADM3Q8N126 398 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 SPERTQ8NA61 448 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 COPS7BQ9H9Q2 264 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 NENFQ9UMX5 172 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 CHD4Q14839 1912 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 DDX60Q8IY21 1712 aaKnown RBP12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 CCDC195A0A1B0GUA6 201 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 ZSCAN5BA6NJL1 495 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 PIK3CDO00329 1044 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 TMCC2O75069 709 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 FTLP02792 175 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 CD247P20963 164 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 SLC16A2P36021 539 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 SCNN1DP51172 638 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 CASP5P51878 434 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 RPL26P61254 145 aaKnown RBP12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 FOXD4Q12950 439 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 PCSK7Q16549 785 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 NEK10Q6ZWH5 1172 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 CLIP4Q8N3C7 705 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 SLC15A4Q8N697 577 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 CDH19Q9H159 772 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 XPNPEP1Q9NQW7 623 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 NCANO14594 1321 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 ARHGAP23Q9P227 1491 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 POTEMA6NI47 508 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 GABBR2O75899 941 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 FARP2O94887 1054 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms