RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 CD8B2A6NJW9 211 aa3.72□□□□□ -1.81
NUP54-208ENST00000508604 TMEM232C9JQI7 657 aa3.72□□□□□ -1.81
NUP54-208ENST00000508604 SLC16A6O15403 523 aa3.72□□□□□ -1.81
NUP54-208ENST00000508604 PRKCBP05771 671 aa3.72□□□□□ -1.81
NUP54-208ENST00000508604 MYBL2P10244 700 aa3.72□□□□□ -1.81
NUP54-208ENST00000508604 FXR1P51114 621 aaKnown RBP eCLIP3.72□□□□□ -1.81
NUP54-208ENST00000508604 LINC00205P59089 165 aa3.72□□□□□ -1.81
NUP54-208ENST00000508604 SEMA3AQ14563 771 aa3.72□□□□□ -1.81
NUP54-208ENST00000508604 L1TD1Q5T7N2 865 aaKnown RBP3.72□□□□□ -1.81
NUP54-208ENST00000508604 MEPCEQ7L2J0 689 aaKnown RBP3.72□□□□□ -1.81
NUP54-208ENST00000508604 FAM90A1Q86YD7 464 aa3.72□□□□□ -1.81
NUP54-208ENST00000508604 ACRBPQ8NEB7 543 aa3.72□□□□□ -1.81
NUP54-208ENST00000508604 ATG4AQ8WYN0 398 aa3.72□□□□□ -1.81
NUP54-208ENST00000508604 FOXP1Q9H334 677 aaPredicted RBP3.72□□□□□ -1.81
NUP54-208ENST00000508604 TMX1Q9H3N1 280 aa3.72□□□□□ -1.81
NUP54-208ENST00000508604 POT1Q9NUX5 634 aa3.72□□□□□ -1.81
NUP54-208ENST00000508604 HESX1Q9UBX0 185 aa3.72□□□□□ -1.81
NUP54-208ENST00000508604 TMA7Q9Y2S6 64 aaKnown RBP3.72□□□□□ -1.81
NUP54-208ENST00000508604 FCHO1O14526 889 aa3.71□□□□□ -1.81
NUP54-208ENST00000508604 DTNBO60941 627 aa3.71□□□□□ -1.81
NUP54-208ENST00000508604 TJP3O95049 919 aa3.71□□□□□ -1.81
NUP54-208ENST00000508604 PDE8BO95263 885 aa3.71□□□□□ -1.81
NUP54-208ENST00000508604 VIL1P09327 827 aaKnown RBP3.71□□□□□ -1.81
NUP54-208ENST00000508604 PIM1P11309 404 aaPredicted RBP3.71□□□□□ -1.81
NUP54-208ENST00000508604 ADKP55263 362 aaKnown RBP3.71□□□□□ -1.81
NUP54-208ENST00000508604 HTRA4P83105 476 aaPredicted RBP3.71□□□□□ -1.81
NUP54-208ENST00000508604 DSC2Q02487 901 aa3.71□□□□□ -1.81
NUP54-208ENST00000508604 BOP1Q14137 746 aaKnown RBP3.71□□□□□ -1.81
NUP54-208ENST00000508604 INAVAQ3KP66 663 aa3.71□□□□□ -1.81
NUP54-208ENST00000508604 EFCAB2Q5VUJ9 269 aa3.71□□□□□ -1.81
NUP54-208ENST00000508604 RGS7BPQ6MZT1 257 aaPredicted RBP3.71□□□□□ -1.81
NUP54-208ENST00000508604 NECAB2Q7Z6G3 386 aa3.71□□□□□ -1.81
NUP54-208ENST00000508604 PNMA8AQ86V59 439 aaPredicted RBP3.71□□□□□ -1.81
NUP54-208ENST00000508604 VCPIP1Q96JH7 1222 aa3.71□□□□□ -1.81
NUP54-208ENST00000508604 TEKT5Q96M29 485 aa3.71□□□□□ -1.81
NUP54-208ENST00000508604 CIPCQ9C0C6 399 aa3.71□□□□□ -1.81
NUP54-208ENST00000508604 ABCF2Q9UG63 623 aa3.71□□□□□ -1.81
NUP54-208ENST00000508604 FAM90A8PA6NJQ4 464 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 GCATO75600 419 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 ALPLP05186 524 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 FAM90A13PP0C7W8 464 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 FAM90A24PP0C7X0 464 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 PRF1P14222 555 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 RENBPP51606 427 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 LILRA4P59901 499 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 C4orf46Q504U0 113 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 C10orf25Q5T742 122 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 MEX3CQ5U5Q3 659 aaKnown RBP3.71□□□□□ -1.82
NUP54-208ENST00000508604 PIM3Q86V86 326 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 MIER2Q8N344 545 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 ADAMTS18Q8TE60 1221 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 CCDC17Q96LX7 622 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 EFHD1Q9BUP0 239 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 MRPL46Q9H2W6 279 aaKnown RBP3.71□□□□□ -1.82
NUP54-208ENST00000508604 SHOC2Q9UQ13 582 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 SSX2IPQ9Y2D8 614 aa3.71□□□□□ -1.82
NUP54-208ENST00000508604 SHTN1A0MZ66 631 aa3.7□□□□□ -1.82
NUP54-208ENST00000508604 LRRC14BA6NHZ5 514 aa3.7□□□□□ -1.82
NUP54-208ENST00000508604 H3BNX3 289 aa3.7□□□□□ -1.82
NUP54-208ENST00000508604 FZD9O00144 591 aa3.7□□□□□ -1.82
NUP54-208ENST00000508604 ABLIM3O94929 683 aa3.7□□□□□ -1.82
NUP54-208ENST00000508604 A1BGP04217 495 aa3.7□□□□□ -1.82
NUP54-208ENST00000508604 THBS3P49746 956 aa3.7□□□□□ -1.82
NUP54-208ENST00000508604 ALDH5A1P51649 535 aaPredicted RBP3.7□□□□□ -1.82
NUP54-208ENST00000508604 KRT85P78386 507 aa3.7□□□□□ -1.82
NUP54-208ENST00000508604 NPY5RQ15761 445 aa3.7□□□□□ -1.82
NUP54-208ENST00000508604 FAM187BQ17R55 369 aa3.7□□□□□ -1.82
NUP54-208ENST00000508604 LVRNQ6Q4G3 990 aa3.7□□□□□ -1.82
NUP54-208ENST00000508604 HEATR3Q7Z4Q2 680 aa3.7□□□□□ -1.82
NUP54-208ENST00000508604 THOC3Q96J01 351 aaKnown RBP3.7□□□□□ -1.82
NUP54-208ENST00000508604 FAM167AQ96KS9 214 aa3.7□□□□□ -1.82
NUP54-208ENST00000508604 SQORQ9Y6N5 450 aa3.7□□□□□ -1.82
NUP54-208ENST00000508604 BTBD19C9JJ37 291 aa3.69□□□□□ -1.82
NUP54-208ENST00000508604 ADAM10O14672 748 aa3.69□□□□□ -1.82
NUP54-208ENST00000508604 MYCLP12524 364 aaPredicted RBP3.69□□□□□ -1.82
NUP54-208ENST00000508604 PHKG2P15735 406 aa3.69□□□□□ -1.82
NUP54-208ENST00000508604 PDE6CP51160 858 aa3.69□□□□□ -1.82
NUP54-208ENST00000508604 SP2Q02086 613 aa3.69□□□□□ -1.82
NUP54-208ENST00000508604 NOGQ13253 232 aa3.69□□□□□ -1.82
NUP54-208ENST00000508604 CCDC157Q569K6 752 aa3.69□□□□□ -1.82
NUP54-208ENST00000508604 LCE1EQ5T753 118 aa3.69□□□□□ -1.82
NUP54-208ENST00000508604 CBARPQ8N350 705 aaPredicted RBP3.69□□□□□ -1.82
NUP54-208ENST00000508604 PCSK9Q8NBP7 692 aaKnown RBP3.69□□□□□ -1.82
NUP54-208ENST00000508604 OSR1Q8TAX0 266 aaPredicted RBP3.69□□□□□ -1.82
NUP54-208ENST00000508604 BRIX1Q8TDN6 353 aaKnown RBP3.69□□□□□ -1.82
NUP54-208ENST00000508604 ZC3H10Q96K80 434 aaKnown RBP3.69□□□□□ -1.82
NUP54-208ENST00000508604 TRMT13Q9NUP7 481 aaKnown RBP3.69□□□□□ -1.82
NUP54-208ENST00000508604 NDRG4Q9ULP0 352 aaKnown RBP3.69□□□□□ -1.82
NUP54-208ENST00000508604 PRKAB1Q9Y478 270 aa3.69□□□□□ -1.82
NUP54-208ENST00000508604 LY6G6EA0A0G2JKS1 128 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 DCLK1O15075 740 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 PCDHGA12O60330 932 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 CRYABP02511 175 aaKnown RBP3.68□□□□□ -1.82
NUP54-208ENST00000508604 FTLP02792 175 aaPredicted RBP3.68□□□□□ -1.82
NUP54-208ENST00000508604 T-ENOLP0DO92 83 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 LRPAP1P30533 357 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 ZNF91Q05481 1191 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 ABCB5Q2M3G0 1257 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 TRIM71Q2Q1W2 868 aaKnown RBP3.68□□□□□ -1.82
NUP54-208ENST00000508604 SYDE2Q5VT97 1194 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms