RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ZIK1Q3SY52 487 aaPredicted RBP4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 SPDYAQ5MJ70 313 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 ARHGAP40Q5TG30 622 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 ANO1Q5XXA6 986 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 GGT6Q6P531 493 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 USP17L6PQ6QN14 398 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 KCTD20Q7Z5Y7 419 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 CYP2W1Q8TAV3 490 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 MYEOVQ96EZ4 313 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 OSBPL9Q96SU4 736 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 HERPUD2Q9BSE4 406 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 C1QTNF3Q9BXJ4 246 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 KRTAP4-7Q9BYR0 210 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 FAM83DQ9H4H8 585 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 UNKLQ9H9P5 680 aaKnown RBP4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 TM7SF3Q9NS93 570 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 INTS13Q9NVM9 706 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 DNMT3BQ9UBC3 853 aaKnown RBP4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 TSC22D4Q9Y3Q8 395 aa4.84□□□□□ -1.63
HMGB1P28-201ENST00000507778 FAM234BA2RU67 622 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 GOLGA6L3A6NEY3 463 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 PODXLO00592 558 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 KCNQ3O43525 872 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 RGS10O43665 173 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 RRP9O43818 475 aaKnown RBP4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 PPFIA4O75335 1185 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 PIAS2O75928 621 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 PEX11BO96011 259 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 NR4A1P22736 598 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 GABRB3P28472 473 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 PUM3Q15397 648 aaKnown RBP4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 CDSNQ15517 529 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 TIGD2Q4W5G0 525 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 CCDC38Q502W7 563 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 INO80DQ53TQ3 878 aaPredicted RBP4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 ICE2Q659A1 982 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 RGS7BPQ6MZT1 257 aaPredicted RBP4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 CCDC174Q6PII3 467 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 RNF207Q6ZRF8 634 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 SLC15A3Q8IY34 581 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 SPARTQ8N0X7 666 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 GLIS1Q8NBF1 620 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 PLEKHG4BQ96PX9 1271 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 KRTAP3-1Q9BYR8 98 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 CXorf36Q9H7Y0 433 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 RGL1Q9NZL6 768 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 DKK2Q9UBU2 259 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 NDRG4Q9ULP0 352 aaKnown RBP4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 FZD1Q9UP38 647 aa4.83□□□□□ -1.64
HMGB1P28-201ENST00000507778 A0A087WZ62 844 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 hCG_1642624A0A1W2PR95 340 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 TMEM200CA6NKL6 621 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 NBNO60934 754 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 SKAP2O75563 359 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 SPDEFO95238 335 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 C1SP09871 688 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 TYRP1P17643 537 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 ZFP36P26651 326 aaKnown RBP4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 CHKAP35790 457 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 HALP42357 657 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 ADAM17P78536 824 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 GUCY1B3Q02153 619 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 EFEMP1Q12805 493 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 BLMHQ13867 455 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 PTCHD3Q3KNS1 767 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 PRR16Q569H4 304 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 VPS53Q5VIR6 699 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 KRT73Q86Y46 540 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 SYNE4Q8N205 404 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 ANKRD42Q8N9B4 389 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 DNAJB14Q8TBM8 379 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 ZNF384Q8TF68 577 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 FUBP1Q96AE4 644 aaKnown RBP4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 FAM136AQ96C01 138 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 C18orf8Q96DM3 657 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 ADAM2Q99965 735 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 TPSD1Q9BZJ3 242 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 AMBRA1Q9C0C7 1298 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 NECTIN3Q9NQS3 549 aa4.82□□□□□ -1.64
HMGB1P28-201ENST00000507778 UNC119BA6NIH7 251 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 SRGAP2O75044 1071 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 COQ9O75208 318 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 CSTBP04080 98 aaKnown RBP4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 PRKAR1BP31321 381 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 ATICP31939 592 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 FSTL1Q12841 308 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 CCNIQ14094 377 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 KCNAB1Q14722 419 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 RAB30Q15771 203 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 MAPKAPK3Q16644 382 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 PFKFB4Q16877 469 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 TUBB8Q3ZCM7 444 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 ZACNQ401N2 412 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 SPATS1Q496A3 300 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 MZT2AQ6P582 158 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 CRTC1Q6UUV9 634 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 KIAA0408Q6ZU52 694 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 USP49Q70CQ1 688 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 FAM109AQ8N4B1 249 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms