RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 KYAT1Q16773 422 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 VSIG10LQ86VR7 867 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 ARID3BQ8IVW6 561 aaPredicted RBP17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 SPATA18Q8TC71 538 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 MAGEC3Q8TD91 643 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 SCG3Q8WXD2 468 aaKnown RBP17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 ATP8B3O60423 1300 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 ROBO3Q96MS0 1386 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 UPP2O95045 317 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 HNRNPH3P31942 346 aaKnown RBP17■□□□□ 0.31
CCDC88B-209ENST00000494080 TSPY1Q01534 308 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 PID1Q7Z2X4 250 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 BBS5Q8N3I7 341 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 APPL2Q8NEU8 664 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 AFG1LQ8WV93 481 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 ALKBH8Q96BT7 664 aaKnown RBP17■□□□□ 0.31
CCDC88B-209ENST00000494080 OPTNQ96CV9 577 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 ASTN1O14525 1302 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 A0A087WZ62 844 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 ADCY3O60266 1144 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 SESN2P58004 480 aaPredicted RBP17■□□□□ 0.31
CCDC88B-209ENST00000494080 DGKDQ16760 1214 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 IRGCQ6NXR0 463 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 FDXACB1Q9BRP7 624 aaPredicted RBP17■□□□□ 0.31
CCDC88B-209ENST00000494080 VPS11Q9H270 941 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 CTNNAL1Q9UBT7 734 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 LOC100653049A0A140TA62 436 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 APOL1O14791 398 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 KRT34O76011 436 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 CACNB2Q08289 660 aaPredicted RBP17■□□□□ 0.31
CCDC88B-209ENST00000494080 GNASQ5JWF2 1037 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 NIPA1Q7RTP0 329 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 PRPF39Q86UA1 669 aaKnown RBP17■□□□□ 0.31
CCDC88B-209ENST00000494080 CYP39A1Q9NYL5 469 aa17■□□□□ 0.31
CCDC88B-209ENST00000494080 A8MUI8 341 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 ENTPD5O75356 428 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 UNC5CO95185 931 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 ACBD5Q5T8D3 534 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 AGAP3Q96P47 875 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 SHCBP1LQ9BZQ2 653 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 TRPV6Q9H1D0 765 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 SALL4Q9UJQ4 1053 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 EPHX2P34913 555 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 PEX5P50542 639 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 LACTB2Q53H82 288 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 AGR3Q8TD06 166 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 CPB2Q96IY4 423 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 HAUS8Q9BT25 410 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 IPO11Q9UI26 975 aaKnown RBP16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 MCF2P10911 925 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 LAMTOR4Q0VGL1 99 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 AUHQ13825 339 aaKnown RBP16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 MFSD14CQ5VZR4 134 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 MPZL3Q6UWV2 235 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 ARHGEF26Q96DR7 871 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 CISHQ9NSE2 258 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 WHRNQ9P202 907 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 CALCAP01258 141 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 CXCL8P10145 99 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 RAP1GAPP47736 663 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 PTDSS1P48651 473 aaKnown RBP16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 MAP1SQ66K74 1059 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 DNERQ8NFT8 737 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 CGRRF1Q99675 332 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 FOXP3Q9BZS1 431 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 DNAJC18Q9H819 358 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 WDR70Q9NW82 654 aa16.99■□□□□ 0.31
CCDC88B-209ENST00000494080 GAS2O43903 313 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-209ENST00000494080 SLC34A1Q06495 639 aa16.98■□□□□ 0.31
CCDC88B-209ENST00000494080 RYBPQ8N488 228 aaPredicted RBP16.98■□□□□ 0.31
CCDC88B-209ENST00000494080 FAM84AQ96KN4 292 aa16.98■□□□□ 0.31
CCDC88B-209ENST00000494080 PARP4Q9UKK3 1724 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-209ENST00000494080 EEF1DP29692 281 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-209ENST00000494080 ARMC3Q5W041 872 aa16.98■□□□□ 0.31
CCDC88B-209ENST00000494080 EMC1Q8N766 993 aa16.98■□□□□ 0.31
CCDC88B-209ENST00000494080 FAM111AQ96PZ2 611 aa16.98■□□□□ 0.31
CCDC88B-209ENST00000494080 KCTD10Q9H3F6 313 aa16.98■□□□□ 0.31
CCDC88B-209ENST00000494080 SLC44A4Q53GD3 710 aa16.98■□□□□ 0.31
CCDC88B-209ENST00000494080 HDAC11Q96DB2 347 aa16.98■□□□□ 0.31
CCDC88B-209ENST00000494080 ASCC2Q9H1I8 757 aaPredicted RBP16.98■□□□□ 0.31
CCDC88B-209ENST00000494080 SYNPO2Q9UMS6 1093 aa16.98■□□□□ 0.31
CCDC88B-209ENST00000494080 BNIP3LO60238 219 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 MGRN1O60291 552 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 INSRRP14616 1297 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 ATXN3P54252 364 aaPredicted RBP16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 TMEM259Q4ZIN3 620 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 LRRC74BQ6ZQY2 392 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 CDKL3Q8IVW4 592 aaPredicted RBP16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 GALNT4Q8N4A0 578 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 ATXN7L3BQ96GX2 97 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 CCDC138Q96M89 665 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 TBC1D10AQ9BXI6 508 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 LZTS1Q9Y250 596 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 NPM3O75607 178 aaKnown RBP16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 ZNF286BP0CG31 522 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 CYP2C8P10632 490 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 PTK7Q13308 1070 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 RIPK1Q13546 671 aa16.97■□□□□ 0.31
CCDC88B-209ENST00000494080 VGLL4Q14135 290 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms