RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 POLR2MP0CAP2 368 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 GLRA2P23416 452 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 CD97P48960 835 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 FMO1Q01740 532 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 BST1Q10588 318 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 USH1GQ495M9 461 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 TBC1D10BQ4KMP7 808 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-209ENST00000487188 RINT1Q6NUQ1 792 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 CLEC10AQ8IUN9 316 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 SLF2Q8IX21 1173 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 DEFB107AQ8IZN7 70 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 LRRC43Q8N309 656 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 EFCAB3Q8N7B9 438 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.51□□□□□ -1.37
VPS13D-209ENST00000487188 GAB3Q8WWW8 586 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 CPA5Q8WXQ8 436 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 RSPH1Q8WYR4 309 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 THAP11Q96EK4 314 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 MAF1Q9H063 256 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 MRPL47Q9HD33 250 aaKnown RBP6.51□□□□□ -1.37
VPS13D-209ENST00000487188 RRN3Q9NYV6 651 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 HSFX1Q9UBD0 423 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 PPP1R1BQ9UD71 204 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-209ENST00000487188 COL1A1P02452 1464 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-209ENST00000487188 LOC100653049A0A140TA62 436 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 TRIM49D1C9J1S8 452 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 ALOX15BO15296 676 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 PSTPIP1O43586 416 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 KRT34O76011 436 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 DLDP09622 509 aaKnown RBP6.51□□□□□ -1.37
VPS13D-209ENST00000487188 OCM2P0CE71 109 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 OCMP0CE72 109 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-209ENST00000487188 NUP107P57740 925 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 TBL3Q12788 808 aaKnown RBP6.51□□□□□ -1.37
VPS13D-209ENST00000487188 ZBTB17Q13105 803 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 STX3Q13277 289 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 HNRNPDQ14103 355 aaKnown RBP6.51□□□□□ -1.37
VPS13D-209ENST00000487188 DCUN1D2Q6PH85 259 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 KYAT3Q6YP21 454 aaKnown RBP6.51□□□□□ -1.37
VPS13D-209ENST00000487188 ANKS1BQ7Z6G8 1248 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 ADGRG6Q86SQ4 1221 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 USP37Q86T82 979 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 RELL1Q8IUW5 271 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 SEPT12Q8IYM1 358 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 BANPQ8N9N5 519 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 SERPINI1Q99574 410 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 TSPYL2Q9H2G4 693 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-209ENST00000487188 BCAS3Q9H6U6 928 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 JMJD4Q9H9V9 463 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 ZDHHC7Q9NXF8 308 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 EURLQ9NYK6 297 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 SELENONQ9NZV5 590 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 SPATA7Q9P0W8 599 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 SEL1LQ9UBV2 794 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 NUMBLQ9Y6R0 609 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 UBE4BO95155 1302 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 C10orf71Q711Q0 1435 aa6.51□□□□□ -1.37
VPS13D-209ENST00000487188 DCAF8L1A6NGE4 600 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 PROSCO94903 275 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 GCAP28676 217 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 STIP1P31948 543 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 NFX1Q12986 1120 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 PDAP1Q13442 181 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 ATP1A4Q13733 1029 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 PRKD1Q15139 912 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 ZYXQ15942 572 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 MYLK3Q32MK0 819 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 DUS1LQ6P1R4 473 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 DENND5BQ6ZUT9 1274 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 CHSY1Q86X52 802 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 TRIM50Q86XT4 487 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 XXYLT1Q8NBI6 393 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 DQX1Q8TE96 717 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 SRPK1Q96SB4 655 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 DCUN1D5Q9BTE7 237 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 MECRQ9BV79 373 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 ACSS3Q9H6R3 686 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 CAAP1Q9H8G2 361 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 C1orf112Q9NSG2 853 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 FAIMQ9NVQ4 179 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 BTG4Q9NY30 223 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 SSX2IPQ9Y2D8 614 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 ANKRD36CQ5JPF3 1778 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 MYH11P35749 1972 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 SBF2Q86WG5 1849 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 RREB1Q92766 1687 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 BTBD19C9JJ37 291 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 NOP56O00567 594 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 VILLO15195 856 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 TLR3O15455 904 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 CFLARO15519 480 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 XPOTO43592 962 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 BUD23O43709 281 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 PSMC3P17980 439 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 HSPA13P48723 471 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 DLG4P78352 724 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 FAAP100Q0VG06 881 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 TRPC3Q13507 836 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 GPATCH4Q5T3I0 446 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 TMEM53Q6P2H8 277 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms