RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 YWHABP31946 246 aaKnown RBP13.92□□□□□ -0.18
USP40-214ENST00000483519 ETV4P43268 484 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 RIPOR1Q6ZS17 1223 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 MYLK4Q86YV6 388 aaPredicted RBP13.92□□□□□ -0.18
USP40-214ENST00000483519 PASD1Q8IV76 773 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 FBXO36Q8NEA4 188 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 POMGNT1Q8WZA1 660 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 FAM111AQ96PZ2 611 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 TUBGCP5Q96RT8 1024 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 DDX50Q9BQ39 737 aaKnown RBP13.92□□□□□ -0.18
USP40-214ENST00000483519 GPAMQ9HCL2 828 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 ARHGEF4Q9NR80 690 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 ZNF277Q9NRM2 450 aaPredicted RBP13.92□□□□□ -0.18
USP40-214ENST00000483519 ARMCX1Q9P291 453 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 SNCAIPQ9Y6H5 919 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.92□□□□□ -0.18
USP40-214ENST00000483519 COMMD3-BMI1R4GMX3 469 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 LYPLA2O95372 231 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 BGNP21810 368 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 CACNB3P54284 484 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 ACTR3P61158 418 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 ATP13A4Q4VNC1 1196 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 FAM102BQ5T8I3 360 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 ABRAQ8N0Z2 381 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 HAUS1Q96CS2 278 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 ZDHHC15Q96MV8 337 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 CYTH2Q99418 400 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 NDNQ99608 321 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 GPRC5CQ9NQ84 441 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 PKD2L1Q9P0L9 805 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 STRIP2Q9ULQ0 834 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 SMCHD1A6NHR9 2005 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 hCG_1818297A0A087WSY0 165 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 E7ESA3 106 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 SPECC1L-ADORA2AF8WAN1 911 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 I3L4J1 428 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 ENO1P06733 434 aaKnown RBP13.91□□□□□ -0.18
USP40-214ENST00000483519 CPA2P48052 419 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 DMP1Q13316 513 aaPredicted RBP13.91□□□□□ -0.18
USP40-214ENST00000483519 TBCCQ15814 346 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 RFX8Q6ZV50 586 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 TRIM42Q8IWZ5 723 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 NIM1KQ8IY84 436 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 GPD1LQ8N335 351 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 RBM15BQ8NDT2 890 aaKnown RBP13.91□□□□□ -0.18
USP40-214ENST00000483519 TMEM161BQ8NDZ6 487 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 IQCGQ9H095 443 aaKnown RBP13.91□□□□□ -0.18
USP40-214ENST00000483519 ZCWPW1Q9H0M4 648 aa13.91□□□□□ -0.18
USP40-214ENST00000483519 DDX56Q9NY93 547 aaKnown RBP13.91□□□□□ -0.18
USP40-214ENST00000483519 CAPN14A8MX76 684 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 FKBP6O75344 327 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 GH2P01242 217 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 GNA15P30679 374 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 RTP1P59025 263 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 CDC16Q13042 620 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 PTK7Q13308 1070 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 TBC1D25Q3MII6 688 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 BRDTQ58F21 947 aaPredicted RBP13.9□□□□□ -0.18
USP40-214ENST00000483519 FNBP1LQ5T0N5 605 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 ACAD11Q709F0 780 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 MARK2Q7KZI7 788 aaKnown RBP13.9□□□□□ -0.18
USP40-214ENST00000483519 PODNQ7Z5L7 613 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 ALYREFQ86V81 257 aaKnown RBP13.9□□□□□ -0.18
USP40-214ENST00000483519 ULK2Q8IYT8 1036 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 PDIK1LQ8N165 341 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 HAPLN3Q96S86 360 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 IDI2Q9BXS1 227 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 MIS12Q9H081 205 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 WWP1Q9H0M0 922 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 TAGLN3Q9UI15 199 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 ZBTB21Q9ULJ3 1066 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 FAM237BA0A1B0GVD1 139 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 C2orf71A6NGG8 1288 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 BAG2O95816 211 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 SLC18A2Q05940 514 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 FOXD4Q12950 439 aaPredicted RBP13.9□□□□□ -0.18
USP40-214ENST00000483519 C1orf146Q5VVC0 180 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 NAT8LQ8N9F0 302 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 STKLD1Q8NE28 680 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 CPT1BQ92523 772 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 PANX3Q96QZ0 392 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 KCNH7Q9NS40 1196 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 GINM1Q9NU53 330 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 RNF181Q9P0P0 153 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 IVNS1ABPQ9Y6Y0 642 aa13.9□□□□□ -0.18
USP40-214ENST00000483519 UNCXA6NJT0 531 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 ATP5BP06576 529 aaKnown RBP13.89□□□□□ -0.19
USP40-214ENST00000483519 INHBAP08476 426 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 ITGB5P18084 799 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 MSS51Q4VC12 460 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 C9orf131Q5VYM1 1079 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 SH3BP5LQ7L8J4 393 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 SLC35B2Q8TB61 432 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 TTC1Q99614 292 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 FRMD8P1Q9BZ68 369 aaPredicted RBP13.89□□□□□ -0.19
USP40-214ENST00000483519 CNTN3Q9P232 1028 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 PPARGC1AQ9UBK2 798 aaKnown RBP13.89□□□□□ -0.19
USP40-214ENST00000483519 FAM198AQ9UFP1 575 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 PLA2G4CQ9UP65 541 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 PIAS1O75925 651 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms