RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ZNF618Q5T7W0 954 aa7.28□□□□□ -1.24
USP40-213ENST00000483216 CCDC181Q5TID7 509 aa7.28□□□□□ -1.24
USP40-213ENST00000483216 ATG4AQ8WYN0 398 aa7.28□□□□□ -1.24
USP40-213ENST00000483216 PPP1R9BQ96SB3 815 aa7.28□□□□□ -1.24
USP40-213ENST00000483216 STRBPQ96SI9 672 aaKnown RBP7.28□□□□□ -1.24
USP40-213ENST00000483216 DUSP26Q9BV47 211 aa7.28□□□□□ -1.24
USP40-213ENST00000483216 CXorf36Q9H7Y0 433 aa7.28□□□□□ -1.24
USP40-213ENST00000483216 TLK1Q9UKI8 766 aa7.28□□□□□ -1.24
USP40-213ENST00000483216 INSL6Q9Y581 213 aa7.28□□□□□ -1.24
USP40-213ENST00000483216 ZAR1LA6NP61 321 aa7.27□□□□□ -1.25
USP40-213ENST00000483216 MGST3O14880 152 aa7.27□□□□□ -1.25
USP40-213ENST00000483216 KIAA0355O15063 1070 aa7.27□□□□□ -1.25
USP40-213ENST00000483216 SLC16A3O15427 465 aaKnown RBP7.27□□□□□ -1.25
USP40-213ENST00000483216 PQBP1O60828 265 aaKnown RBP7.27□□□□□ -1.25
USP40-213ENST00000483216 CAND2O75155 1236 aa7.27□□□□□ -1.25
USP40-213ENST00000483216 NXPH3O95157 252 aa7.27□□□□□ -1.25
USP40-213ENST00000483216 CSF1RP07333 972 aa7.27□□□□□ -1.25
USP40-213ENST00000483216 PDHA1P08559 390 aa7.27□□□□□ -1.25
USP40-213ENST00000483216 PHKG2P15735 406 aa7.27□□□□□ -1.25
USP40-213ENST00000483216 ZFXP17010 805 aaPredicted RBP7.27□□□□□ -1.25
USP40-213ENST00000483216 CLK3P49761 638 aaKnown RBP7.27□□□□□ -1.25
USP40-213ENST00000483216 INHBEP58166 350 aa7.27□□□□□ -1.25
USP40-213ENST00000483216 SAFBQ15424 915 aaKnown RBP eCLIP7.27□□□□□ -1.25
USP40-213ENST00000483216 ZDHHC24Q6UX98 284 aa7.27□□□□□ -1.25
USP40-213ENST00000483216 SLC15A3Q8IY34 581 aa7.27□□□□□ -1.25
USP40-213ENST00000483216 APOL5Q9BWW9 433 aa7.27□□□□□ -1.25
USP40-213ENST00000483216 UNKQ9C0B0 810 aaKnown RBP7.27□□□□□ -1.25
USP40-213ENST00000483216 SLC17A6Q9P2U8 582 aa7.27□□□□□ -1.25
USP40-213ENST00000483216 DKK3Q9UBP4 350 aa7.27□□□□□ -1.25
USP40-213ENST00000483216 ZNHIT2Q9UHR6 403 aa7.27□□□□□ -1.25
USP40-213ENST00000483216 CCP110O43303 1012 aa7.26□□□□□ -1.25
USP40-213ENST00000483216 PRC1O43663 620 aa7.26□□□□□ -1.25
USP40-213ENST00000483216 URI1O94763 535 aaPredicted RBP7.26□□□□□ -1.25
USP40-213ENST00000483216 ELFN1P0C7U0 828 aa7.26□□□□□ -1.25
USP40-213ENST00000483216 NR2F6P10588 404 aa7.26□□□□□ -1.25
USP40-213ENST00000483216 BMP5P22003 454 aa7.26□□□□□ -1.25
USP40-213ENST00000483216 PDE6CP51160 858 aa7.26□□□□□ -1.25
USP40-213ENST00000483216 SP2Q02086 613 aa7.26□□□□□ -1.25
USP40-213ENST00000483216 EIF2B5Q13144 721 aaKnown RBP7.26□□□□□ -1.25
USP40-213ENST00000483216 INSCQ1MX18 579 aa7.26□□□□□ -1.25
USP40-213ENST00000483216 PLAC9Q5JTB6 97 aa7.26□□□□□ -1.25
USP40-213ENST00000483216 GRASPQ7Z6J2 395 aaPredicted RBP7.26□□□□□ -1.25
USP40-213ENST00000483216 PJA1Q8NG27 643 aa7.26□□□□□ -1.25
USP40-213ENST00000483216 BPIFB1Q8TDL5 484 aa7.26□□□□□ -1.25
USP40-213ENST00000483216 SERTAD4Q9NUC0 356 aa7.26□□□□□ -1.25
USP40-213ENST00000483216 SH2B3Q9UQQ2 575 aa7.26□□□□□ -1.25
USP40-213ENST00000483216 LOC102723971A0A1B0GUV8 181 aa7.25□□□□□ -1.25
USP40-213ENST00000483216 ONECUT2O95948 504 aa7.25□□□□□ -1.25
USP40-213ENST00000483216 SLC5A1P13866 664 aa7.25□□□□□ -1.25
USP40-213ENST00000483216 ATXN1P54253 815 aaKnown RBP7.25□□□□□ -1.25
USP40-213ENST00000483216 SMN1Q16637 294 aaKnown RBP7.25□□□□□ -1.25
USP40-213ENST00000483216 ZNF551Q7Z340 670 aaPredicted RBP7.25□□□□□ -1.25
USP40-213ENST00000483216 MAVSQ7Z434 540 aa7.25□□□□□ -1.25
USP40-213ENST00000483216 CCAR1Q8IX12 1150 aaKnown RBP7.25□□□□□ -1.25
USP40-213ENST00000483216 TIMP4Q99727 224 aa7.25□□□□□ -1.25
USP40-213ENST00000483216 STK31Q9BXU1 1019 aa7.25□□□□□ -1.25
USP40-213ENST00000483216 CHST8Q9H2A9 424 aa7.25□□□□□ -1.25
USP40-213ENST00000483216 DHX36Q9H2U1 1008 aaKnown RBP7.25□□□□□ -1.25
USP40-213ENST00000483216 RIOX1Q9H6W3 641 aa7.25□□□□□ -1.25
USP40-213ENST00000483216 C11orf21Q9P2W6 132 aa7.25□□□□□ -1.25
USP40-213ENST00000483216 FAM50BQ9Y247 325 aa7.25□□□□□ -1.25
USP40-213ENST00000483216 ENTPD2Q9Y5L3 495 aa7.25□□□□□ -1.25
USP40-213ENST00000483216 CDY1Q9Y6F8 540 aa7.25□□□□□ -1.25
USP40-213ENST00000483216 LINC00473A8K010 186 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 RHPN2P1A8MT19 583 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 GCOM1H8Y6P7 765 aaPredicted RBP7.24□□□□□ -1.25
USP40-213ENST00000483216 RASSF9O75901 435 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 TTLL1O95922 423 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 TXNP10599 105 aaKnown RBP7.24□□□□□ -1.25
USP40-213ENST00000483216 IL1R1P14778 569 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 PCSK6P29122 969 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 PIK3CBP42338 1070 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 TBX4P57082 545 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 ZNF362Q5T0B9 420 aaPredicted RBP7.24□□□□□ -1.25
USP40-213ENST00000483216 STRIP1Q5VSL9 837 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 ABRAQ8N0Z2 381 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 PPP2R3CQ969Q6 453 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 ZG16BQ96DA0 208 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 BRIP1Q9BX63 1249 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 GLOD4Q9HC38 313 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 DNMT3BQ9UBC3 853 aaKnown RBP7.24□□□□□ -1.25
USP40-213ENST00000483216 TBC1D30Q9Y2I9 924 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 SNX13Q9Y5W8 968 aa7.24□□□□□ -1.25
USP40-213ENST00000483216 ANO9A1A5B4 782 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 A1L4Q6 167 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 F8W8V4 182 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 APAF1O14727 1248 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 IL18RAPO95256 599 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 NUDT3O95989 172 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 KRT18P05783 430 aaKnown RBP7.23□□□□□ -1.25
USP40-213ENST00000483216 IL6RP08887 468 aaPredicted RBP7.23□□□□□ -1.25
USP40-213ENST00000483216 WT1P19544 449 aaPredicted RBP7.23□□□□□ -1.25
USP40-213ENST00000483216 LIPAP38571 399 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 ALDH9A1P49189 494 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 PRKAG1P54619 331 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 DAG1Q14118 895 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 ARHGEF7Q14155 803 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 SLC29A2Q14542 456 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 TREML2Q5T2D2 321 aa7.23□□□□□ -1.25
USP40-213ENST00000483216 C11orf96Q7Z7L8 435 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms