RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CDK17Q00537 523 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 FMO1Q01740 532 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 MGAT5BQ3V5L5 792 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 CFAP221Q4G0U5 840 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 DENND1BQ6P3S1 775 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 LILRA6Q6PI73 481 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 VPS36Q86VN1 386 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 PASD1Q8IV76 773 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 SCN4BQ8IWT1 228 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 SMARCD1Q96GM5 515 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.96□□□□□ -0.33
SDC1-206ENST00000482879 DUSP16Q9BY84 665 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 NSUN3Q9H649 340 aaKnown RBP12.96□□□□□ -0.33
SDC1-206ENST00000482879 CYP4F11Q9HBI6 524 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 KRT82Q9NSB4 513 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 ARHGAP20Q9P2F6 1191 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 MAFFQ9ULX9 164 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 ZNF638Q14966 1978 aaKnown RBP12.96□□□□□ -0.34
SDC1-206ENST00000482879 PRRG1O14668 218 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 C1RP00736 705 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 NPR3P17342 541 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 IGFBP4P22692 258 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 NRIP1P48552 1158 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 TUFMP49411 452 aaKnown RBP12.95□□□□□ -0.34
SDC1-206ENST00000482879 BCAT1P54687 386 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 MAP3K7CLP57077 242 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 SLC8A3P57103 927 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 PDE4CQ08493 712 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 BST2Q10589 180 aaKnown RBP12.95□□□□□ -0.34
SDC1-206ENST00000482879 ADGRE1Q14246 886 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 DUSP6Q16828 381 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 PKDCCQ504Y2 493 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 TCEAL5Q5H9L2 206 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 GPR153Q6NV75 609 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 VSTM1Q6UX27 236 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 CYP26C1Q6V0L0 522 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 TRIM72Q6ZMU5 477 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 TTC30AQ86WT1 665 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 TMTC1Q8IUR5 882 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 TTC9BQ8N6N2 239 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 KREMEN2Q8NCW0 462 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 SLC22A17Q8WUG5 538 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 SECISBP2LQ93073 1101 aaKnown RBP12.95□□□□□ -0.34
SDC1-206ENST00000482879 PPP1R9BQ96SB3 815 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 GAS2L1Q99501 681 aaPredicted RBP12.95□□□□□ -0.34
SDC1-206ENST00000482879 CDCA3Q99618 268 aaPredicted RBP12.95□□□□□ -0.34
SDC1-206ENST00000482879 SEPT5Q99719 369 aaPredicted RBP12.95□□□□□ -0.34
SDC1-206ENST00000482879 SMOQ99835 787 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 BAG1Q99933 345 aaPredicted RBP12.95□□□□□ -0.34
SDC1-206ENST00000482879 SYT11Q9BT88 431 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 LHX5Q9H2C1 402 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 CRISPLD1Q9H336 500 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 DEF6Q9H4E7 631 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 IGFLR1Q9H665 355 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 FBXW11Q9UKB1 542 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 CEP83Q9Y592 693 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 MTCH2Q9Y6C9 303 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 GREB1Q4ZG55 1949 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 TRANK1O15050 2925 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 DOCK6Q96HP0 2047 aa12.95□□□□□ -0.34
SDC1-206ENST00000482879 SSU72P8A0A1W2PR75 194 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 F8VP50 259 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 SOAT2O75908 522 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 BEST1O76090 585 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 SETSIPP0DME0 302 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 EPCAMP16422 314 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 POU3F3P20264 500 aaPredicted RBP12.94□□□□□ -0.34
SDC1-206ENST00000482879 FECHP22830 423 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 ANXA13P27216 316 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 GPD2P43304 727 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 CACNA2D1P54289 1103 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 RPL10AP62906 217 aaKnown RBP12.94□□□□□ -0.34
SDC1-206ENST00000482879 MAPK8IP2Q13387 824 aaPredicted RBP12.94□□□□□ -0.34
SDC1-206ENST00000482879 DDR2Q16832 855 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 LLGL2Q6P1M3 1020 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 CLEC20AQ6ZU45 233 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 CCDC149Q6ZUS6 474 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 LRRC8AQ8IWT6 810 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 TCEAL8Q8IYN2 117 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 TMEM35BQ8NCS4 154 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 CCDC42Q96M95 316 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 KCNK16Q96T55 309 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 PCDHB18PQ96TA0 734 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 PLEKHA4Q9H4M7 779 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 NHEJ1Q9H9Q4 299 aaPredicted RBP12.94□□□□□ -0.34
SDC1-206ENST00000482879 CSNK1G1Q9HCP0 422 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 DMAP1Q9NPF5 467 aaPredicted RBP12.94□□□□□ -0.34
SDC1-206ENST00000482879 TMEM30AQ9NV96 361 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 HSFX1Q9UBD0 423 aa12.94□□□□□ -0.34
SDC1-206ENST00000482879 FAM170AA1A519 330 aa12.93□□□□□ -0.34
SDC1-206ENST00000482879 TULP2O00295 520 aa12.93□□□□□ -0.34
SDC1-206ENST00000482879 DDX3XO00571 662 aaKnown RBP eCLIP12.93□□□□□ -0.342e-8■■□□□ 13.3
SDC1-206ENST00000482879 XPO1O14980 1071 aaKnown RBP12.93□□□□□ -0.34
SDC1-206ENST00000482879 TRIM66O15016 1216 aa12.93□□□□□ -0.34
SDC1-206ENST00000482879 AKR1B10O60218 316 aa12.93□□□□□ -0.34
SDC1-206ENST00000482879 LSM8O95777 96 aaKnown RBP12.93□□□□□ -0.34
SDC1-206ENST00000482879 CYP1A1P04798 512 aaPredicted RBP12.93□□□□□ -0.34
SDC1-206ENST00000482879 GTF2F1P35269 517 aaKnown RBP eCLIP12.93□□□□□ -0.34
SDC1-206ENST00000482879 ALDH1A3P47895 512 aa12.93□□□□□ -0.34
SDC1-206ENST00000482879 GPR15P49685 360 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms