RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	NARF	Q9UHQ1	456 aa		5.01	□□□□□ -1.61
PTCD3-212	ENST00000477520	HERC5	Q9UII4	1024 aa	Known RBP	5.01	□□□□□ -1.61
PTCD3-212	ENST00000477520	ANGPTL2	Q9UKU9	493 aa		5.01	□□□□□ -1.61
PTCD3-212	ENST00000477520	TBC1D30	Q9Y2I9	924 aa		5.01	□□□□□ -1.61
PTCD3-212	ENST00000477520	STXBP5L	Q9Y2K9	1186 aa		5.01	□□□□□ -1.61
PTCD3-212	ENST00000477520	NOC2L	Q9Y3T9	749 aa	Known RBP	5.01	□□□□□ -1.61
PTCD3-212	ENST00000477520	USH1C	Q9Y6N9	552 aa		5.01	□□□□□ -1.61
PTCD3-212	ENST00000477520	NUP188	Q5SRE5	1749 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	ABCB11	O95342	1321 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	STK36	Q9NRP7	1315 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	SPECC1L-ADORA2A	F8WAN1	911 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	TEX33	O43247	280 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	MGEA5	O60502	916 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	TPPP	O94811	219 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	CAMTA2	O94983	1202 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	ZWINT	O95229	277 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	ITGB3	P05106	788 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	MME	P08473	750 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	ITGA2B	P08514	1039 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	ATF2	P15336	505 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	PFKL	P17858	780 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	KCNA3	P22001	575 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	ANXA13	P27216	316 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	HOXD12	P35452	270 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	HSD17B3	P37058	310 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	MAPKAPK2	P49137	400 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	CARS	P49589	748 aa	Known RBP	5	□□□□□ -1.61
PTCD3-212	ENST00000477520	CDK7	P50613	346 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	MTTP	P55157	894 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	ADAR	P55265	1226 aa	Known RBP	5	□□□□□ -1.61
PTCD3-212	ENST00000477520	HPCA	P84074	193 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	GUCY2D	Q02846	1103 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	DLX2	Q07687	328 aa	Predicted RBP	5	□□□□□ -1.61
PTCD3-212	ENST00000477520	MCL1	Q07820	350 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	GOLGA8F	Q08AF8	430 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	GOLGA8DP	Q0D2H9	430 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	AP1B1	Q10567	949 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	TCIRG1	Q13488	830 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	CAMK2G	Q13555	558 aa	Predicted RBP	5	□□□□□ -1.61
PTCD3-212	ENST00000477520	PLS1	Q14651	629 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	KRT31	Q15323	416 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	CCDC6	Q16204	474 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	CNPY1	Q3B7I2	92 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	KRT71	Q3SY84	523 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	PARP10	Q53GL7	1025 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	MAP3K21	Q5TCX8	1036 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	MFSD4B	Q5TF39	518 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	ARMC3	Q5W041	872 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	TRIM68	Q6AZZ1	485 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	ZC3H14	Q6PJT7	736 aa	Known RBP	5	□□□□□ -1.61
PTCD3-212	ENST00000477520	OLFML1	Q6UWY5	402 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	TMTC3	Q6ZXV5	915 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	MARK2	Q7KZI7	788 aa	Known RBP	5	□□□□□ -1.61
PTCD3-212	ENST00000477520	G2E3	Q7L622	706 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	LRP10	Q7Z4F1	713 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	CATIP	Q7Z7H3	387 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	SAPCD2	Q86UD0	394 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	FOXP4	Q8IVH2	680 aa	Predicted RBP	5	□□□□□ -1.61
PTCD3-212	ENST00000477520	MAP7D3	Q8IWC1	876 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	NUP93	Q8N1F7	819 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	ALLC	Q8N6M5	410 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	TMEM52	Q8NDY8	209 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	ACTRT1	Q8TDG2	376 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	USP33	Q8TEY7	942 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	SEC14L1	Q92503	715 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	TAF4B	Q92750	862 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	SYN2	Q92777	582 aa	Predicted RBP	5	□□□□□ -1.61
PTCD3-212	ENST00000477520	ABHD8	Q96I13	439 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	SORCS2	Q96PQ0	1159 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	NUDCD1	Q96RS6	583 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	JMJD8	Q96S16	334 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	RBM15	Q96T37	977 aa	Known RBP eCLIP	5	□□□□□ -1.61
PTCD3-212	ENST00000477520	MAP3K14	Q99558	947 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	5	□□□□□ -1.61	1e-13	■■■□□ 17.4
PTCD3-212	ENST00000477520	MTA3	Q9BTC8	594 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	ANKRD2	Q9GZV1	360 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	NACA2	Q9H009	215 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	TAOK3	Q9H2K8	898 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	MRPL46	Q9H2W6	279 aa	Known RBP	5	□□□□□ -1.61
PTCD3-212	ENST00000477520	TLE6	Q9H808	572 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	FAIM	Q9NVQ4	179 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	SRRD	Q9UH36	339 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	LNPEP	Q9UIQ6	1025 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	INTU	Q9ULD6	942 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	TTC7A	Q9ULT0	858 aa	Predicted RBP	5	□□□□□ -1.61
PTCD3-212	ENST00000477520	NFU1	Q9UMS0	254 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	SATB2	Q9UPW6	733 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	MAP3K2	Q9Y2U5	619 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	REXO2	Q9Y3B8	237 aa	Known RBP	5	□□□□□ -1.61
PTCD3-212	ENST00000477520	ATP6V0A2	Q9Y487	856 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	SRPRB	Q9Y5M8	271 aa	Known RBP	5	□□□□□ -1.61
PTCD3-212	ENST00000477520	QSER1	Q2KHR3	1735 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	NUP98	P52948	1817 aa		5	□□□□□ -1.61
PTCD3-212	ENST00000477520	MYPN	Q86TC9	1320 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520		A0A1W2PQ45	241 aa	Predicted RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520		A0A1W2PQY0	241 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	KANSL1L	A0AUZ9	987 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	BICDL2	A1A5D9	508 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	HTR3E	A5X5Y0	456 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	KCNJ18	B7U540	433 aa		4.99	□□□□□ -1.61

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