RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 WARSP23381 471 aaKnown RBP21.13■□□□□ 0.97
COL9A3-210ENST00000472880 LMO2P25791 158 aa21.13■□□□□ 0.97
COL9A3-210ENST00000472880 CYP27A1Q02318 531 aa21.13■□□□□ 0.97
COL9A3-210ENST00000472880 SPEM2Q0P670 501 aa21.13■□□□□ 0.97
COL9A3-210ENST00000472880 SRSF5Q13243 272 aaKnown RBP21.13■□□□□ 0.97
COL9A3-210ENST00000472880 KCNB1Q14721 858 aa21.13■□□□□ 0.97
COL9A3-210ENST00000472880 FOXD4L6Q3SYB3 417 aaPredicted RBP21.13■□□□□ 0.97
COL9A3-210ENST00000472880 TMEM196Q5HYL7 178 aa21.13■□□□□ 0.97
COL9A3-210ENST00000472880 VSTM1Q6UX27 236 aa21.13■□□□□ 0.97
COL9A3-210ENST00000472880 FOXD4L3Q6VB84 417 aaPredicted RBP21.13■□□□□ 0.97
COL9A3-210ENST00000472880 TRAPPC11Q7Z392 1133 aa21.13■□□□□ 0.97
COL9A3-210ENST00000472880 HSCBQ8IWL3 235 aa21.13■□□□□ 0.97
COL9A3-210ENST00000472880 CPA6Q8N4T0 437 aa21.13■□□□□ 0.97
COL9A3-210ENST00000472880 SNX21Q969T3 373 aa21.13■□□□□ 0.97
COL9A3-210ENST00000472880 EXOC4Q96A65 974 aa21.13■□□□□ 0.97
COL9A3-210ENST00000472880 CGRRF1Q99675 332 aa21.13■□□□□ 0.97
COL9A3-210ENST00000472880 PARD6AQ9NPB6 346 aa21.13■□□□□ 0.97
COL9A3-210ENST00000472880 CRTAC1Q9NQ79 661 aa21.13■□□□□ 0.97
COL9A3-210ENST00000472880 OTOL1A6NHN0 477 aaPredicted RBP21.12■□□□□ 0.97
COL9A3-210ENST00000472880 TRDMT1O14717 391 aaKnown RBP21.12■□□□□ 0.97
COL9A3-210ENST00000472880 CLIC2O15247 247 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 POLR2DO15514 142 aaKnown RBP21.12■□□□□ 0.97
COL9A3-210ENST00000472880 TGFB1I1O43294 461 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 HRO43593 1189 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 PDIA4P13667 645 aaKnown RBP21.12■□□□□ 0.97
COL9A3-210ENST00000472880 BDNFP23560 247 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 ANXA13P27216 316 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 HOXA6P31267 233 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 SNRPFP62306 86 aaKnown RBP21.12■□□□□ 0.97
COL9A3-210ENST00000472880 CYP24A1Q07973 514 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 USP4Q13107 963 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 PSMD6Q15008 389 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 ZNF77Q15935 545 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 FSTL4Q6MZW2 842 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 CEP68Q76N32 757 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 WDR5BQ86VZ2 330 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 XXYLT1Q8NBI6 393 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 SCFD1Q8WVM8 642 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 CCDC127Q96BQ5 260 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 SNX25Q9H3E2 840 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 FAM13BQ9NYF5 915 aa21.12■□□□□ 0.97
COL9A3-210ENST00000472880 LRP3O75074 770 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 ATG13O75143 517 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 PDGFRBP09619 1106 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 ZSCAN22P10073 491 aaPredicted RBP21.11■□□□□ 0.97
COL9A3-210ENST00000472880 TGM1P22735 817 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 GRIK1P39086 918 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 ME1P48163 572 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 IFNAR2P48551 515 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 PDE6CP51160 858 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 TNNC1P63316 161 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 ARL14EPQ8N8R7 260 aaPredicted RBP21.11■□□□□ 0.97
COL9A3-210ENST00000472880 OSCP1Q8WVF1 389 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 ATP2A3Q93084 1043 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 CHFRQ96EP1 664 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 SPATA17Q96L03 361 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 CEP295NLQ96MC4 621 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 SLC22A12Q96S37 553 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 CYP2S1Q96SQ9 504 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 BLZF1Q9H2G9 400 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 DUS2Q9NX74 493 aaKnown RBP21.11■□□□□ 0.97
COL9A3-210ENST00000472880 CEP250Q9BV73 2442 aa21.11■□□□□ 0.97
COL9A3-210ENST00000472880 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.1■□□□□ 0.97
COL9A3-210ENST00000472880 C2orf78A6NCI8 922 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 TRIM66O15016 1216 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 F13A1P00488 732 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 DRD1P21728 446 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 CASP1P29466 404 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 EHHADHQ08426 723 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 MDH1BQ5I0G3 518 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 PKN3Q6P5Z2 889 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 DENND5BQ6ZUT9 1274 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 MYCBPAPQ8TBZ2 947 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 PCED1BQ96HM7 432 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 P2RY13Q9BPV8 354 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 MRPL45Q9BRJ2 306 aaKnown RBP21.1■□□□□ 0.97
COL9A3-210ENST00000472880 ECT2Q9H8V3 914 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 EHD2Q9NZN4 543 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 CGNQ9P2M7 1197 aaKnown RBP21.1■□□□□ 0.97
COL9A3-210ENST00000472880 SLC8A2Q9UPR5 921 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 WNT6Q9Y6F9 365 aa21.1■□□□□ 0.97
COL9A3-210ENST00000472880 RNF40O75150 1001 aa21.09■□□□□ 0.97
COL9A3-210ENST00000472880 EGFP01133 1207 aa21.09■□□□□ 0.97
COL9A3-210ENST00000472880 GJA4P35212 333 aa21.09■□□□□ 0.97
COL9A3-210ENST00000472880 GNL1P36915 607 aaPredicted RBP21.09■□□□□ 0.97
COL9A3-210ENST00000472880 AFMP43652 599 aa21.09■□□□□ 0.97
COL9A3-210ENST00000472880 TRPC3Q13507 836 aa21.09■□□□□ 0.97
COL9A3-210ENST00000472880 BMT2Q1RMZ1 405 aa21.09■□□□□ 0.97
COL9A3-210ENST00000472880 OR6B3Q8NGW1 331 aa21.09■□□□□ 0.97
COL9A3-210ENST00000472880 SH3RF2Q8TEC5 729 aa21.09■□□□□ 0.97
COL9A3-210ENST00000472880 SLC39A2Q9NP94 309 aa21.09■□□□□ 0.97
COL9A3-210ENST00000472880 TRPM5Q9NZQ8 1165 aa21.09■□□□□ 0.97
COL9A3-210ENST00000472880 GCNT4Q9P109 453 aa21.09■□□□□ 0.97
COL9A3-210ENST00000472880 PCDHA7Q9UN72 937 aa21.09■□□□□ 0.97
COL9A3-210ENST00000472880 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.09■□□□□ 0.97
COL9A3-210ENST00000472880 PTPRDP23468 1912 aa21.09■□□□□ 0.97
COL9A3-210ENST00000472880 HELZP42694 1942 aaKnown RBP21.09■□□□□ 0.97
COL9A3-210ENST00000472880 GREB1Q4ZG55 1949 aa21.09■□□□□ 0.97
COL9A3-210ENST00000472880 ANAPC1Q9H1A4 1944 aa21.08■□□□□ 0.97
COL9A3-210ENST00000472880 PVALEFA0A1B0GWK0 134 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms